EY649567

Overview
NameEY649567
Unique NameEY649567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 34/94 (36.17%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  166 YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            +P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +  +Y+ +KDEDGFLY+ Y+ + TFG
Sbjct:   27 HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/94 (36.17%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  166 YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            +P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +Y+ +KDEDGFLY+  + + TFG
Sbjct:   27 HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120          
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  169 PDRIPVIVEK--AERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV-DNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            P+++PVI+E+   ERS +P +D+ K+LVP  +TV + + ++R+R++L  ++A F+ V +  +      MS +Y +++D DGF+Y+ Y+ +  FG
Sbjct:   38 PNKVPVIIERFDGERS-LPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130          
The following BLAST results are available for this feature:
BLAST of EY649567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MLP3B_BOVIN7.618e-1436.17Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN2.216e-1336.17Microtubule-associated proteins 1A/1B light chain ... [more]
LGG2_CAEEL3.201e-1235.11Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-A11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649567 ID=EY649567; Name=EY649567; organism=Citrus sinensis; type=EST; length=677bp
CCACGCGTCCGGGTTAATCCAATCTTCTTTAATCAGCAACTGCACGACGA
CGATAGCTTCATTGTATATTATATATGATAATTAACGACAATGAGTAAAA
GCAACTTCAAGATTGAGCATGAATTCGAGAAAAGGCGTGCTGAGGCGGAA
AGAATTAGGGAGAAATACCCAGATAGAATTCCGGTGATAGTGGAAAAGGC
TGAGAGAAGTGATATTCCTACAATTGACAAGAAAAAATATTTAGTCCCTG
CTGACTTAACAGTGGGTCAGTTTGTGTATGTGATACGGAAGAGAATTAAA
CTGAGCGCAGAAAAGGCAATCTTTATATTTGTGGACAATGTTCTCCCGCC
TACAGGAGCAATAATGTCTACCATATATGATGAAAAGAAGGATGAAGATG
GGTTTCTCTATGTTACTTACAGTGGTGAAAACACATTTGGATAGCATAAT
CTGCCGCTACCCTTTTTCCTCTACCAACGTTTCGTTTGTTAATCTACTCA
TCTTGAATTTAGTGTTTCTGTTTTCTGGCTTTGTGCCGGTCATAATCCGG
CTTCTTATTTACATGACCTTTTATGCTTGTATATAGCCGGTTCAAACTAT
GTGGTATCAGACTGATGATTGCGAATAATTTAAATTCGATGGAAGTGTGG
TATCAATCCCTCAAAAAAAAAAAAAAA
back to top