CN187754

Overview
NameCN187754
Unique NameCN187754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 3
Query:  369 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSH 581
            PR+AF T+S VD L+DGYRWRKYGQKAVKN+ FPRSYYRCT+  C VKK+V+R + D  +V+TTYEG H H
Sbjct:  133 PRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCH 203          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 3
Query:  372 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSH 581
            R AF T+S+VD L+DGYRWRKYGQKAVKN+ FPRSYYRCT   CNVKK+V+R  +D   VVTTYEG H+H
Sbjct:  161 RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTH 230          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  369 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERSTDN 605
            PR+ F+T S+VD+LDDGYRWRKYGQK VKN + PRSYYRCT   C VKK+V+RL  D  +V+TTYEG H H      D+
Sbjct:  209 PRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHSPSNHLDD 287          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = -2
Query:   47 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 244
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.366e-22
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 3
Query:  369 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPI 587
            PR   QT S+VD+LDDGYRWRKYGQK VK N +PRSYY+CT  GC V+K V+R   D   VVTTYEG H+H +
Sbjct:  395 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDL 467          

HSP 2 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 3
Query:  411 DDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERST 599
            DDGY WRKYGQK VK ++FPRSYY+CT+ GC VKK+V+R + D  V    Y+G H+H   ++T
Sbjct:  229 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVER-SLDGQVTEIIYKGQHNHEPPQNT 290          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.366e-22
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  369 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSH--PIERSTDNFE 611
            PR   QT S+VDILDDGYRWRKYGQK V+ N  PRSYY+CT  GC V+K V+R + D   V+TTYEG H H  P  +S+ N E
Sbjct:  367 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSSSNHE 449          

HSP 2 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  405 ILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHP 584
            + DDGY WRKYGQK VK ++FPRSYY+CTH  C VKK  +R + D  +    Y+G H HP
Sbjct:  209 LADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFER-SHDGQITDIIYKGTHDHP 267          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 3
Query:  369 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPI 587
            PR   QT S +D+L DG+RWRKYGQK VK N  PRSYY+CT QGC VKKQV+R   DE  V+TTYEG H+H I
Sbjct:  314 PRVVVQTISDIDVLIDGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDI 386          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 48/92 (52.17%), Postives = 59/92 (64.13%), Query Frame = 3
Query:  369 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTS 644
            PR   QT S+VD+LDDGYRWRKYGQK VK N +PRSYY+CT   C V+K V+R   D   VVTTYEG H+H +  +  +   +    Q  TS
Sbjct:  401 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQLRPNNQHNTS 492          

HSP 2 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 47/101 (46.53%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  411 DDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSH--PIERSTDN----FEHILNQMQIYTSY*FTPSLASSSKGLDTS 695
            DDGY WRKYGQK VK + FPRSYY+CTH  C VKK+V+R + D  V    Y+G H+H  P +R  +N       I NQ Q   S     SL  S +  +TS
Sbjct:  250 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVER-SLDGQVTEIIYKGQHNHELPQKRGNNNGSCKSSDIANQFQTSNS-----SLNKSKRDQETS 344          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.156e-21
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  369 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPI 587
            PR   QT S VDILDDGYRWRKYGQK VK N  PRSYY+CT  GC V+K V+R + D   V+TTYEG H+H +
Sbjct:  473 PRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDV 545          

HSP 2 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  411 DDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSH----PIERS---TDNFEHILNQMQ 632
            +DGY WRKYGQK VK +++PRSYY+CT+  C VKK+V+R +++  +    Y+G H+H    P  RS    D  E +  Q Q
Sbjct:  273 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVER-SREGHITEIIYKGAHNHLKPPPNRRSGMQVDGTEQVEQQQQ 352          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 3
Query:  369 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPI 587
            P+   QT+S+VD+LDDGYRWRKYGQK VK N  PRSYY+CT   C V+K V+R + D   V+TTYEG H+H +
Sbjct:  292 PKIIVQTKSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDV 364          

HSP 2 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  411 DDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSH 581
            DDGY WRKYGQK +K  ++PRSYY+CTH  C VKK+V+R + D  +    Y+G H H
Sbjct:  167 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVER-SSDGQITQIIYKGQHDH 222          
The following BLAST results are available for this feature:
BLAST of CN187754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
WRK57_ARATH1.906e-2467.61Probable WRKY transcription factor 57 OS=Arabidops... [more]
WRK23_ARATH7.242e-2470.00Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK13_ARATH9.458e-2460.76Probable WRKY transcription factor 13 OS=Arabidops... [more]
MT3_CARPA2.752e-2369.70Metallothionein-like protein type 3 OS=Carica papa... [more]
WRKY4_ARATH1.366e-2263.01Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRK20_ARATH1.366e-2259.04Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRK25_ARATH3.043e-2264.38Probable WRKY transcription factor 25 OS=Arabidops... [more]
WRKY3_ARATH5.190e-2252.17Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRKY2_ARATH1.156e-2163.01Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK58_ARATH1.510e-2158.90Probable WRKY transcription factor 58 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187754 ID=CN187754; Name=CN187754; organism=Citrus sinensis; type=EST; length=737bp
CCTTTAATTCTTATTTTTTGCTGCATGTGTTTGCTTATTAGCGACTACCA
CAAGTGCAGTTCACACAAGCGCAGGTGGGGCCGCACTTGCAGTTACCTTC
AGCCTCAGCAGCCTGAACGTCCATGACAACAACGGTGCTGACAAAGCTCA
AGTCAGTCTCGACGAAGTCAGCAGCATAGCTGCTTCCCTTCTTCACACAC
TGGCTCCTGTCAGCGCAGTCGCAGTTGCCGCAGGTGTCCGACATGTTGAT
TGAGCTTAGAACTTAGAACTTAAAACTGGAAATAGAGGGCTCTTTATTGT
ACGAAACAGGGTCTGAAAACGGAGAGAAAATGGGAAAGATTAAAAAGGGA
GAGAAGAAGGTGAGAAAGCCAAGATATGCTTTTCAAACACGAAGCCAAGT
TGATATACTTGATGATGGCTATAGATGGCGAAAGTATGGCCAAAAAGCTG
TTAAAAACAACAAGTTTCCAAGAAGCTACTACCGATGCACGCATCAAGGC
TGCAATGTGAAGAAGCAAGTTCAACGACTAACCAAAGATGAAGGAGTTGT
GGTGACAACTTACGAAGGAATGCATTCACATCCCATCGAGAGATCAACTG
ATAACTTCGAGCACATCTTGAACCAGATGCAAATCTACACTTCTTATTAA
TTCACTCCCTCACTAGCAAGCAGCAGTAAAGGGCTAGATACTTCTTAATA
CGTTGTAAATTATCTAGCATCCATAAACTTGAACCCT
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