CN187754

Overview
NameCN187754
Unique NameCN187754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.238e-15
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  372 RYAFQTRSQVD-ILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSH 581
            RY  + ++  + + DDGY+WRKYGQK++KN+  PRSYY+CT+  CN KKQV+R   +    + TYEG H H
Sbjct:  100 RYTLKVKNNSNGMCDDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSIDESNTYIITYEGFHFH 170          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.617e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = -2
Query:   47 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 244
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.617e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = -2
Query:   47 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 244
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  372 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCT-HQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERS 596
            R   + R     ++DG +WRKYGQK  K N  PR+YYRCT   GC V+KQVQR   D  +++TTYEG HSH +  S
Sbjct:  214 RVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHSLPLS 289          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRK32_ARATH (Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  372 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSH 581
            ++       V I  DGYRWRKYGQK VK N  PR+YYRCT  GC V+K ++   ++   V+ TY+G+H+H
Sbjct:  318 KFVVHAAGDVGICGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVENTKAVIITYKGVHNH 387          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRK40_ARATH (Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.048e-14
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  405 ILDDGYRWRKYGQKAVKNNKFPRSYYRCT-HQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERSTDN 605
            ++ DGY+WRKYGQK  ++N  PR+Y++C     C+VKK+VQR  +D+ V+V TYEG H+HP+    D+
Sbjct:  144 VVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNHPMPSQIDS 211          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRKY1_DICDI (Probable WRKY transcription factor protein 1 OS=Dictyostelium discoideum GN=wrky1 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  402 DILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERST 599
            +I+ DGY+WRKYGQK VK +  PR YY+CT QGCNV+KQV+R+  D     T Y+G H H   ++T
Sbjct:  811 NIVSDGYQWRKYGQKNVKGSLHPRHYYKCTFQGCNVRKQVERI-GDTNQNSTVYKGEHCHGFPQTT 875          

HSP 2 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 3
Query:  372 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSH------PIERSTDNFEHILN 623
            +   +T S +D LDDG+ WRKYGQK+VK + FP+SY++C    C VKKQV    + +   + TY G H+H       IE+   +F  + N
Sbjct: 1098 KLVIETGSSIDHLDDGFFWRKYGQKSVKGSPFPKSYFKCAELTCPVKKQV---IQQDSKYINTYRGKHNHDPPESEAIEKRKKHFNGLYN 1184          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = -2
Query:   47 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 244
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: WRK70_ARATH (Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  405 ILDDGYRWRKYGQKAVKNNKFPRSYYRCTH---QGCNVKKQVQRLTKDEGVVVTTYEGMHS------HPIERSTDNFEHILNQMQIYTSY*FTPSLASSSKGLD 689
            IL+D + WRKYGQK + N KFPRSY+RCTH   QGC   KQVQ++  +  +   TY G H+       P  ++ D+ + I    + + S    PSL++S K  D
Sbjct:  118 ILEDAFSWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVELEPKMFSITYIGNHTCNTNAETPKSKTCDHHDEIFMDSEDHKS----PSLSTSMKEED 217          
BLAST of CN187754 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = -2
Query:   47 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 244
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CN187754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
WRK49_ARATH1.238e-1549.30Probable WRKY transcription factor 49 OS=Arabidops... [more]
MT3A_ORYSJ1.617e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.617e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
WRK72_ARATH2.112e-1550.00Probable WRKY transcription factor 72 OS=Arabidops... [more]
WRK32_ARATH3.602e-1547.14Probable WRKY transcription factor 32 OS=Arabidops... [more]
WRK40_ARATH1.048e-1448.53Probable WRKY transcription factor 40 OS=Arabidops... [more]
WRKY1_DICDI6.794e-1453.03Probable WRKY transcription factor protein 1 OS=Di... [more]
MT3B_ORYSJ2.582e-1350.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
WRK70_ARATH4.404e-1340.38Probable WRKY transcription factor 70 OS=Arabidops... [more]
MT3B_ORYSI9.810e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187754 ID=CN187754; Name=CN187754; organism=Citrus sinensis; type=EST; length=737bp
CCTTTAATTCTTATTTTTTGCTGCATGTGTTTGCTTATTAGCGACTACCA
CAAGTGCAGTTCACACAAGCGCAGGTGGGGCCGCACTTGCAGTTACCTTC
AGCCTCAGCAGCCTGAACGTCCATGACAACAACGGTGCTGACAAAGCTCA
AGTCAGTCTCGACGAAGTCAGCAGCATAGCTGCTTCCCTTCTTCACACAC
TGGCTCCTGTCAGCGCAGTCGCAGTTGCCGCAGGTGTCCGACATGTTGAT
TGAGCTTAGAACTTAGAACTTAAAACTGGAAATAGAGGGCTCTTTATTGT
ACGAAACAGGGTCTGAAAACGGAGAGAAAATGGGAAAGATTAAAAAGGGA
GAGAAGAAGGTGAGAAAGCCAAGATATGCTTTTCAAACACGAAGCCAAGT
TGATATACTTGATGATGGCTATAGATGGCGAAAGTATGGCCAAAAAGCTG
TTAAAAACAACAAGTTTCCAAGAAGCTACTACCGATGCACGCATCAAGGC
TGCAATGTGAAGAAGCAAGTTCAACGACTAACCAAAGATGAAGGAGTTGT
GGTGACAACTTACGAAGGAATGCATTCACATCCCATCGAGAGATCAACTG
ATAACTTCGAGCACATCTTGAACCAGATGCAAATCTACACTTCTTATTAA
TTCACTCCCTCACTAGCAAGCAGCAGTAAAGGGCTAGATACTTCTTAATA
CGTTGTAAATTATCTAGCATCCATAAACTTGAACCCT
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