CK938535

Overview
NameCK938535
Unique NameCK938535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 351
            +RGVR R WG +VSEIR P +KTRIWLG+F +A+ AARA+D AA  +KG+ A LNFP  A   PRP S S  DIQ
Sbjct:   79 YRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPHDIQ 153          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 351
            +RGVR R WG +VSEIR P +K+RIWLG+F + E AARA+D AA  +KG  A LNFP  A + PRP S S +DIQ
Sbjct:   51 YRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQ 125          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.357e-17
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 351
            +RGVR R WG +VSEIR P +K+RIWLG+F +AE A RA+D AA  +KG  A LNFP  +  LPRP S S +D++
Sbjct:   19 YRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFPELSKLLPRPVSLSPRDVR 93          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.084e-16
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQV 354
            + GVRKR+WG +V+EIRLP  + RIWLGSF SAEKAARA+D+A + L+G  A  NFP +   +P   S + + IQV
Sbjct:    7 YTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDNPPEIPGGRSLTPQQIQV 82          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.084e-16
Identity = 35/62 (56.45%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  112 QNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            + + PF+G+R R+WG +V+EIR P +++R+WLGS+ + E AARAYD+A FYL+G  ATLNFP
Sbjct:   16 KRERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFP 77          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVXXXXXXXLVEMGDRIESECSGSGG 426
            ++GVRKR+WG +VSEIRLP  + RIWLGS+ + EKAARA+D+A + L+GN A  NFP +   +    + SR +I+             +  E + SG  G
Sbjct:   12 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNPPVISGGRNLSRSEIR------EAAARFANSAEDDSSGGAG 105          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            +RGVR+R WG +V+EIRLP  +TR+WLG+F +AEKAA AYD AAF L+G++A LNFP
Sbjct:   71 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFP 127          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  112 QNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            + D P++G+R R+WG +V+EIR P +++RIWLGS+ + E AARAYD+A FYL+G  A LNFP
Sbjct:   25 KRDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFP 86          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 34/62 (54.84%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  112 QNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            + D P++G+R R+WG +V+EIR P +++R+WLGS+ + E AARAYD+A FYL+G  A LNFP
Sbjct:   16 KRDRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFP 77          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 351
            +RGVR+R  G +VSE+R P +KTRIWLG+F +AE AARA+D AA  L+G  A LNF  SA  L  PES   KDIQ
Sbjct:   48 YRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQ 122          
The following BLAST results are available for this feature:
BLAST of CK938535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ERF36_ARATH3.799e-1860.00Ethylene-responsive transcription factor ERF036 OS... [more]
DREB3_ARATH8.463e-1858.67Dehydration-responsive element-binding protein 3 O... [more]
ERF43_ARATH9.357e-1756.00Ethylene-responsive transcription factor ERF043 OS... [more]
ERF16_ARATH2.084e-1653.95Ethylene-responsive transcription factor ERF016 OS... [more]
ERF11_ARATH2.084e-1656.45Ethylene-responsive transcription factor ERF011 OS... [more]
ERF17_ARATH3.556e-1642.00Ethylene-responsive transcription factor ERF017 OS... [more]
ERF56_ARATH4.644e-1664.91Ethylene-responsive transcription factor ERF056 OS... [more]
RA210_ARATH6.065e-1656.45Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF10_ARATH7.921e-1654.84Ethylene-responsive transcription factor ERF010 OS... [more]
DRE1B_ARATH7.921e-1658.67Dehydration-responsive element-binding protein 1B ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_E05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938535 ID=CK938535; Name=CK938535; organism=Citrus sinensis; type=EST; length=666bp
GGGGAGACAAACACTCTCTTCTTCATGTCTGTAACGACACAAACACAAGA
GCCTTCACAACTTCAACCCGGTTCGTCAACCTCCAAACCGGGTTCAAAGA
AAAGGACACGCCAAAACGACACGCCGTTTCGGGGAGTGCGTAAACGGAGG
TGGGGCAGCTACGTTTCGGAGATACGGTTGCCAGGTGAAAAGACCCGGAT
ATGGCTCGGGTCATTTGGGTCAGCCGAGAAGGCGGCTCGGGCTTATGACT
CTGCGGCTTTCTATTTAAAAGGCAACTTGGCGACTCTTAACTTTCCGGCC
TCGGCCGGCGCGCTTCCTCGACCGGAGTCTTGTTCGAGGAAAGACATACA
GGTAGCAGCCGCTAAAGCTGCGGCTCTTGTAGAGATGGGCGACCGGATTG
AGTCGGAATGCAGCGGTTCGGGTGGTGAACCGGACTGTGGAGATTGGTGG
GAAAGGGAAACGACGGCGTCTGATGAAGTGAAGGTGGCGCCATTGCTGAG
TCCACCCAGATTTGACTCGGACATTGGGGAGCTGTATTGTTGGATGGATG
ATGATAATTTTCTACTGGGGTCTTGTTTAGAATTGTAAAGGACTTTTTTT
TGTGTAAAATATTATAAATTTCAACAACTAAGAACTTTGCCTTTTCGNNN
NNNNNNNATNNNAAAA
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