CK938535

Overview
NameCK938535
Unique NameCK938535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.444e-11
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNF 294
            +RGVR+R WG + +EIR P  +TR+WLG+F +AE+AA  YD AA  +KG+ A  NF
Sbjct:   99 YRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPE 327
            +RGVR+R WG + +EIR P +   R+WLG++ SAE+AA AY  AAF ++G  A LNFP   G L  PE
Sbjct:  107 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIG-LNEPE 173          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            +RGVR+R WG + +EIR P +   R+WLG+F +AE AA AYD AAF ++G+ A LNFP
Sbjct:  117 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFP 174          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPES 330
            ++GVR+R WG +V+EIR P    R+WLG+F ++ +AA AYDSAA  L G  A LN P S  + P+  S
Sbjct:   42 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLPESLRSYPKTAS 109          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            +RGVR+R WG Y +EIR   +   R+WLG+F +AE AARAYD AA+ ++G  A LNFP
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFP 77          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 1
Query:  121 TPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP-ASAGALPRP 324
            T +RGVR+R WG Y +EIR P  K R WLG+F +AE+AA AYDSAA   +G  A  NF   +A  +P P
Sbjct:   55 TRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYPTAVIMPEP 123          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF25_ARATH (Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 40/75 (53.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 351
            FRG+R R  G +VSEIR P + TRIWLG++   E AA AYD AA  LKG  A LNFP  A     P S S  DI+
Sbjct:   65 FRGIRLRN-GKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPDAVLNFPGLALTYVAPVSNSAADIR 138          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: DRE1F_ORYSJ (Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  127 FRGVRKRRWGS-YVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNL-ATLNFPASAGALPRPESCSRKDIQV 354
            +RGVR R  GS +V E+R P  + RIWLG++ + E AARA+D AA  L+G   A LNFP S   LPR  + S +DI++
Sbjct:   47 YRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAELNFPDSPSTLPRARTASPEDIRL 124          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: DRE1F_ORYSI (Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. indica GN=DREB1F PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  127 FRGVRKRRWGS-YVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNL-ATLNFPASAGALPRPESCSRKDIQV 354
            +RGVR R  GS +V E+R P  + RIWLG++ + E AARA+D AA  L+G   A LNFP S   LPR  + S +DI++
Sbjct:   47 YRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAELNFPDSPSTLPRARTASPEDIRL 124          
The following BLAST results are available for this feature:
BLAST of CK938535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
CRF5_ARATH3.444e-1153.57Ethylene-responsive transcription factor CRF5 OS=A... [more]
ERF1_SOLLC4.498e-1151.47Ethylene-responsive transcription factor 1 OS=Sola... [more]
EF101_ARATH4.498e-1155.17Ethylene-responsive transcription factor 2 OS=Arab... [more]
DRE2D_ARATH4.498e-1148.53Dehydration-responsive element-binding protein 2D ... [more]
ERF97_ARATH5.874e-1155.17Ethylene-responsive transcription factor 14 OS=Ara... [more]
ESR1_ARATH7.672e-1152.17Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF25_ARATH7.672e-1153.33Ethylene-responsive transcription factor ERF025 OS... [more]
DRE1F_ORYSJ7.672e-1148.72Dehydration-responsive element-binding protein 1F ... [more]
DRE1F_ORYSI7.672e-1148.72Dehydration-responsive element-binding protein 1F ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_E05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938535 ID=CK938535; Name=CK938535; organism=Citrus sinensis; type=EST; length=666bp
GGGGAGACAAACACTCTCTTCTTCATGTCTGTAACGACACAAACACAAGA
GCCTTCACAACTTCAACCCGGTTCGTCAACCTCCAAACCGGGTTCAAAGA
AAAGGACACGCCAAAACGACACGCCGTTTCGGGGAGTGCGTAAACGGAGG
TGGGGCAGCTACGTTTCGGAGATACGGTTGCCAGGTGAAAAGACCCGGAT
ATGGCTCGGGTCATTTGGGTCAGCCGAGAAGGCGGCTCGGGCTTATGACT
CTGCGGCTTTCTATTTAAAAGGCAACTTGGCGACTCTTAACTTTCCGGCC
TCGGCCGGCGCGCTTCCTCGACCGGAGTCTTGTTCGAGGAAAGACATACA
GGTAGCAGCCGCTAAAGCTGCGGCTCTTGTAGAGATGGGCGACCGGATTG
AGTCGGAATGCAGCGGTTCGGGTGGTGAACCGGACTGTGGAGATTGGTGG
GAAAGGGAAACGACGGCGTCTGATGAAGTGAAGGTGGCGCCATTGCTGAG
TCCACCCAGATTTGACTCGGACATTGGGGAGCTGTATTGTTGGATGGATG
ATGATAATTTTCTACTGGGGTCTTGTTTAGAATTGTAAAGGACTTTTTTT
TGTGTAAAATATTATAAATTTCAACAACTAAGAACTTTGCCTTTTCGNNN
NNNNNNNATNNNAAAA
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