CK938535

Overview
NameCK938535
Unique NameCK938535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: DRE2B_ARATH (Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana GN=DREB2B PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.328e-14
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGA 312
            FRGVR+R WG +V+EIR P   TR+WLG+F +AEKAA AYD AA  + G+LA LNFP S G+
Sbjct:   78 FRGVRQRIWGKWVAEIREPKIGTRLWLGTFPTAEKAASAYDEAATAMYGSLARLNFPQSVGS 139          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.346e-14
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  124 PFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            P+RG+R+R+WG +V+EIR P +++R+WLGS+ +   AARAYD A FYL+G  A LNFP
Sbjct:   30 PYRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFP 87          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.346e-14
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            +RGVR+R WG Y +EIR P +K R+WLGSF + E+AARAYDSAA   +G+ AT NFP
Sbjct:   53 YRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.346e-14
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            +RGVR+R+WG +V+EIR P  + R+WLG+F +AE+AA AYD  AF L+G+ ATLNFP
Sbjct:  143 YRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFP 199          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.346e-14
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRP 324
            +RGVR+R WG + +EIR P    R+WLG+F +AE AARAYD AA   +GN A LNFP     LP P
Sbjct:   77 YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPPP 142          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.677e-14
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            FRGVRKR WG + +EIR P +KTR+WLG+F SAE AARAYD+AA  L+G  A  NFP
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFP 84          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.677e-14
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRK 342
            +RGVR+R WG + +EIR P +K +RIWLG+F S   AARAYD AAF L+G  A LNFP  AG    P +  RK
Sbjct:  107 YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRK 179          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            +RGVR+R WG +V+EIR P  +TR+WLG+F +AE+AA AYD  AF L+G  A LNFP
Sbjct:  187 YRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP 243          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.683e-14
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPA 300
            +RGVRKR WG Y +EIR PG+K+R+WLG+F +AE+AA+AYD+AA   +G  A  NFP+
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPS 84          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            +RGVRKR WG Y +EIR PG+K+R+WLG+F +AE+AA+AYD+AA   +G  A  NFP
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
The following BLAST results are available for this feature:
BLAST of CK938535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
DRE2B_ARATH3.328e-1461.29Dehydration-responsive element-binding protein 2B ... [more]
RAP21_ARATH4.346e-1456.90Ethylene-responsive transcription factor RAP2-1 OS... [more]
ERF77_ARATH4.346e-1461.40Ethylene-responsive transcription factor 10 OS=Ara... [more]
ERF54_ARATH4.346e-1459.65Ethylene-responsive transcription factor ERF054 OS... [more]
EF110_ARATH4.346e-1454.55Ethylene-responsive transcription factor ERF110 OS... [more]
ERF3_TOBAC5.677e-1464.91Ethylene-responsive transcription factor 3 OS=Nico... [more]
EF107_ARATH5.677e-1454.79Ethylene-responsive transcription factor ERF107 OS... [more]
ERF53_ARATH7.414e-1459.65Ethylene-responsive transcription factor ERF053 OS... [more]
ERF4_TOBAC9.683e-1458.62Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY1.265e-1359.65Ethylene-responsive transcription factor 4 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_E05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938535 ID=CK938535; Name=CK938535; organism=Citrus sinensis; type=EST; length=666bp
GGGGAGACAAACACTCTCTTCTTCATGTCTGTAACGACACAAACACAAGA
GCCTTCACAACTTCAACCCGGTTCGTCAACCTCCAAACCGGGTTCAAAGA
AAAGGACACGCCAAAACGACACGCCGTTTCGGGGAGTGCGTAAACGGAGG
TGGGGCAGCTACGTTTCGGAGATACGGTTGCCAGGTGAAAAGACCCGGAT
ATGGCTCGGGTCATTTGGGTCAGCCGAGAAGGCGGCTCGGGCTTATGACT
CTGCGGCTTTCTATTTAAAAGGCAACTTGGCGACTCTTAACTTTCCGGCC
TCGGCCGGCGCGCTTCCTCGACCGGAGTCTTGTTCGAGGAAAGACATACA
GGTAGCAGCCGCTAAAGCTGCGGCTCTTGTAGAGATGGGCGACCGGATTG
AGTCGGAATGCAGCGGTTCGGGTGGTGAACCGGACTGTGGAGATTGGTGG
GAAAGGGAAACGACGGCGTCTGATGAAGTGAAGGTGGCGCCATTGCTGAG
TCCACCCAGATTTGACTCGGACATTGGGGAGCTGTATTGTTGGATGGATG
ATGATAATTTTCTACTGGGGTCTTGTTTAGAATTGTAAAGGACTTTTTTT
TGTGTAAAATATTATAAATTTCAACAACTAAGAACTTTGCCTTTTCGNNN
NNNNNNNATNNNAAAA
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