CK938535

Overview
NameCK938535
Unique NameCK938535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  127 FRGVRKRRWGS-YVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 351
            +RGVR+R+  + +VSEIR P +  RIWLG+F + E AA AYD AA  LKG+ A LNFP S  +LP P S S  DIQ
Sbjct:   15 YRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELNFPNSVSSLPAPTSMSPADIQ 90          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAG 309
            +RGVR+R WG Y +EIR P +K  R+WLG+F +A +AAR YD AAF L+G+ A LNFP  AG
Sbjct:   72 YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAG 133          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            FRGVR+R+WGS+VSEIR P  K R+WLG+F +AE AARAYD AA  + G  A  NFP
Sbjct:    7 FRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFP 63          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAG 309
            +RGVR+R WG + +EIR P + TR+WLG+F +AE AARAYD+AA   +G+ A LNFP + G
Sbjct:   61 YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVG 121          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            +RGVR+R WG +V+EIRLP  + R+WLG++ +AE AA AYD AA+ L+G  A LNFP
Sbjct:  136 YRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFP 192          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            FRGVR+R+WGS+VSEIR P  K R+WLG+F +AE AARAYD AA  + G  A  NFP
Sbjct:    7 FRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFP 63          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            FRGVR+R WG + +EIR P     R+WLG+F +AE+AARAYD AAF L+G+LA LNFP
Sbjct:   20 FRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFP 77          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 297
            +RGVRKR WG +VSEIR+P    RIWLGS+ + EKAARAYD+A F ++G     NFP
Sbjct:   27 YRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFP 83          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: DRE1D_ARATH (Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 351
            +RGVR+R  G +V E+R P +K+RIWLG+F + E AARA+D AA  L+G  A LNF  SA  L  PE+   K+IQ
Sbjct:   54 YRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNFADSAWRLRIPETTCPKEIQ 128          
BLAST of CK938535 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  127 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDI 348
            +RGVR+R WG + +EIR P +  R+WLG+F +AE AARAYD AA   +GN A LNFP +   L RP S   + +
Sbjct:  185 YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENV-KLVRPASTEAQPV 257          
The following BLAST results are available for this feature:
BLAST of CK938535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ERF24_ARATH1.265e-1355.26Ethylene-responsive transcription factor ERF024 OS... [more]
EF105_ARATH1.265e-1358.06Ethylene-responsive transcription factor ERF105 OS... [more]
SHN3_ARATH1.652e-1363.16Ethylene-responsive transcription factor SHINE 3 O... [more]
RAP26_ARATH1.652e-1355.74Ethylene-responsive transcription factor RAP2-6 OS... [more]
ERF61_ARATH1.652e-1357.89Ethylene-responsive transcription factor ERF061 OS... [more]
SHN2_ARATH2.157e-1363.16Ethylene-responsive transcription factor SHINE 2 O... [more]
ERF98_ARATH2.157e-1362.07Ethylene-responsive transcription factor ERF098 OS... [more]
ERF15_ARATH2.157e-1359.65Ethylene-responsive transcription factor ERF015 OS... [more]
DRE1D_ARATH2.157e-1352.00Dehydration-responsive element-binding protein 1D ... [more]
ABR1_ARATH2.157e-1350.00Ethylene-responsive transcription factor ABR1 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004441_E05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938535 ID=CK938535; Name=CK938535; organism=Citrus sinensis; type=EST; length=666bp
GGGGAGACAAACACTCTCTTCTTCATGTCTGTAACGACACAAACACAAGA
GCCTTCACAACTTCAACCCGGTTCGTCAACCTCCAAACCGGGTTCAAAGA
AAAGGACACGCCAAAACGACACGCCGTTTCGGGGAGTGCGTAAACGGAGG
TGGGGCAGCTACGTTTCGGAGATACGGTTGCCAGGTGAAAAGACCCGGAT
ATGGCTCGGGTCATTTGGGTCAGCCGAGAAGGCGGCTCGGGCTTATGACT
CTGCGGCTTTCTATTTAAAAGGCAACTTGGCGACTCTTAACTTTCCGGCC
TCGGCCGGCGCGCTTCCTCGACCGGAGTCTTGTTCGAGGAAAGACATACA
GGTAGCAGCCGCTAAAGCTGCGGCTCTTGTAGAGATGGGCGACCGGATTG
AGTCGGAATGCAGCGGTTCGGGTGGTGAACCGGACTGTGGAGATTGGTGG
GAAAGGGAAACGACGGCGTCTGATGAAGTGAAGGTGGCGCCATTGCTGAG
TCCACCCAGATTTGACTCGGACATTGGGGAGCTGTATTGTTGGATGGATG
ATGATAATTTTCTACTGGGGTCTTGTTTAGAATTGTAAAGGACTTTTTTT
TGTGTAAAATATTATAAATTTCAACAACTAAGAACTTTGCCTTTTCGNNN
NNNNNNNATNNNAAAA
back to top