CK938529

Overview
NameCK938529
Unique NameCK938529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2063 contig Csv1_Contig2063:103..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK_FLAS3 (Cysteine synthase OS=Flavobacterium sp. (strain K3-15 / DSM ID92-509) GN=cysK PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.742e-41
Identity = 87/159 (54.72%), Postives = 115/159 (72.33%), Query Frame = 1
Query:  151 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            ++  E IG TP+V +N + +     I  KLE   P  S+KDRI  +MI DAE KGL+   +S +IEPTSGNTGIGLA +AA KGY+LI+ MP SMS+ERR ++ A+GAE VLT   +GMKGA++KA E+ ++TPNS++ +QF+NPAN KIH ETT  EI
Sbjct:    4 QNALETIGNTPVVKINNLFNSD-HEIWIKLEKSNPGGSIKDRIALAMIEDAEAKGLLNK-DSTIIEPTSGNTGIGLALVAAVKGYKLILVMPESMSIERRKIMEAYGAEFVLTPREKGMKGAIEKANELAEETPNSWIPRQFDNPANVKIHVETTAQEI 160          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK_STAAW (Cysteine synthase OS=Staphylococcus aureus (strain MW2) GN=cysK PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.275e-41
Identity = 85/158 (53.80%), Postives = 117/158 (74.05%), Query Frame = 1
Query:  154 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            ++T++IG TP+V L  +VD   A +  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP++H  TTGPE+
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEVHELTTGPEL 163          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK_STAAS (Cysteine synthase OS=Staphylococcus aureus (strain MSSA476) GN=cysK PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.275e-41
Identity = 85/158 (53.80%), Postives = 117/158 (74.05%), Query Frame = 1
Query:  154 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            ++T++IG TP+V L  +VD   A +  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP++H  TTGPE+
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEVHELTTGPEL 163          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK_STAAR (Cysteine synthase OS=Staphylococcus aureus (strain MRSA252) GN=cysK PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.275e-41
Identity = 85/158 (53.80%), Postives = 117/158 (74.05%), Query Frame = 1
Query:  154 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            ++T++IG TP+V L  +VD   A +  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP++H  TTGPE+
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEVHELTTGPEL 163          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK_STAAN (Cysteine synthase OS=Staphylococcus aureus (strain N315) GN=cysK PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.275e-41
Identity = 85/158 (53.80%), Postives = 117/158 (74.05%), Query Frame = 1
Query:  154 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            ++T++IG TP+V L  +VD   A +  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP++H  TTGPE+
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEVHELTTGPEL 163          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK_STAAM (Cysteine synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=cysK PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.275e-41
Identity = 85/158 (53.80%), Postives = 117/158 (74.05%), Query Frame = 1
Query:  154 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            ++T++IG TP+V L  +VD   A +  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP++H  TTGPE+
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEVHELTTGPEL 163          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK_STAAC (Cysteine synthase OS=Staphylococcus aureus (strain COL) GN=cysK PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.275e-41
Identity = 85/158 (53.80%), Postives = 117/158 (74.05%), Query Frame = 1
Query:  154 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            ++T++IG TP+V L  +VD   A +  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP++H  TTGPE+
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEVHELTTGPEL 163          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.646e-41
Identity = 85/161 (52.80%), Postives = 113/161 (70.19%), Query Frame = 1
Query:  145 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            I  +  +LIG TPLV LNR+     A++  KLE   P  SVKDR  Y MI +AE+ GL++PG SV+IEPTSGNTGIGLA  AAA+GY+ I+ MP +M+ ER  +L A+GAE+VLT     M G+++KA+E+ ++ PNSY+  QF+N ANP  H +TT PEI
Sbjct:    4 IVANTADLIGDTPLVRLNRLQPENAAQVYLKLEFFNPSGSVKDRAAYQMIIEAEQNGLLKPG-SVIIEPTSGNTGIGLAMNAAARGYKAILVMPDTMTKERINLLKAYGAEVVLTPGEERMPGSIKKAKELAEQIPNSYIPMQFDNTANPDAHRKTTAPEI 163          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK_HAEIN (Cysteine synthase OS=Haemophilus influenzae GN=cysK PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.092e-39
Identity = 87/166 (52.41%), Postives = 113/166 (68.07%), Query Frame = 1
Query:  145 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGT 639
            I  D +  IG TPLV L     G    +  K+E   P  SVK RIG +M+  AE+ G +  G+ + ++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L   G  LVLT+ A+GMKGA+ KAEEI    P+ YV L+QFENPANP+IH ETTGPEIWK T
Sbjct:    3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDT 165          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAI (Cysteine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysK PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.057e-38
Identity = 90/168 (53.57%), Postives = 114/168 (67.86%), Query Frame = 1
Query:  139 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGT 639
            S I +D +  IG TPLV LNRI +G    I  K+E   P  SVK RIG +MI  AE+   I      LIE TSGNTGI LA++AA++ YRL +TMP +MS+ER+ +L + GAEL+LTD   GMKGA+ KA +I  + P+ Y +L+QFENPANP+IH  TTGPEIW  T
Sbjct:    2 SKIYQDNSLTIGNTPLVRLNRIGNG---NILVKIESRNPSFSVKCRIGANMIWHAEKNNNINKNVK-LIEATSGNTGIALAYVAASRNYRLTLTMPETMSIERKKILKSLGAELILTDGRYGMKGAISKANDIISRNPSKYFLLKQFENPANPEIHQITTGPEIWNDT 165          
The following BLAST results are available for this feature:
BLAST of CK938529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_FLAS31.742e-4154.72Cysteine synthase OS=Flavobacterium sp. (strain K3... [more]
CYSK_STAAW2.275e-4153.80Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAS2.275e-4153.80Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAR2.275e-4153.80Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAN2.275e-4153.80Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAM2.275e-4153.80Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAC2.275e-4153.80Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSM_BACSU8.646e-4152.80Probable cysteine synthase OS=Bacillus subtilis GN... [more]
CYSK_HAEIN8.092e-3952.41Cysteine synthase OS=Haemophilus influenzae GN=cys... [more]
CYSK_BUCAI1.057e-3853.57Cysteine synthase OS=Buchnera aphidicola subsp. Ac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004441_F08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938529 ID=CK938529; Name=CK938529; organism=Citrus sinensis; type=EST; length=639bp
GGGGGACAGNNNNTTTATTTGTTTTTCAATTTTCTACTGTTTTCCAGCTG
CCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCGCTTG
TAACTTGAAAAAAAGAAAAAAAAATGGTGGAGGAGAAGTCCGTGATTGCG
AAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCAACCG
CATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATGATGG
AACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGCTGAT
GCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTGAGCC
TACCAGCGGTAATACTGGCATAGGGTTGGCATTCATGGCAGCTGCTAAGG
GTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAGAAGA
ATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTGCCAG
GGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAGACAC
CGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAAGATC
CACTACGAGACTACCGGACCAGAGATCTGGAAAGGCACC
back to top