CK938529

Overview
NameCK938529
Unique NameCK938529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2063 contig Csv1_Contig2063:103..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAP (Cysteine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysK PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.075e-38
Identity = 90/166 (54.22%), Postives = 112/166 (67.47%), Query Frame = 1
Query:  145 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGT 639
            I +D +  IG TPLV LN I +G    I AK+E   P  SVK RIG +MI DAE+KG +     + IE TSGNTGI LA++AAA+ Y L + MP SMS+ERR +L + GA L+LT+   GMKGA+ KA EI       Y +L+QFENPANP+IH +TTGPEIWK T
Sbjct:    4 IYEDNSFTIGNTPLVRLNNIGNG---NILAKIESRNPSFSVKCRIGANMIWDAEKKGRLNKNIEI-IEATSGNTGIALAYVAAARNYSLTLIMPDSMSIERRKLLKSLGAHLILTNGKHGMKGAISKANEIVSLNTKRYLLLKQFENPANPEIHQKTTGPEIWKDT 165          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.209e-34
Identity = 81/159 (50.94%), Postives = 104/159 (65.41%), Query Frame = 1
Query:  163 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 639
            + IG TPLV L R+     + +  KLE   P  SVKDR   SMI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR  + A+GAEL+L    +GM+GA   A E+ ++     +L QF NP NP  HY TTGPEIW+ T
Sbjct:    6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQT 162          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.579e-34
Identity = 81/159 (50.94%), Postives = 103/159 (64.78%), Query Frame = 1
Query:  163 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 639
            + IG TPLV L R+     + I  KLE   P  SVKDR   SMI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR  + A+GAEL+L    +GM+GA   A  + ++     +L QF NP NP  HY TTGPEIW+ T
Sbjct:    6 QTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALAMSERGEGK-LLDQFNNPDNPYAHYTTTGPEIWRQT 162          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.478e-32
Identity = 71/163 (43.56%), Postives = 102/163 (62.58%), Query Frame = 1
Query:  145 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 633
            +  D+TELIG TPL+ L          + AKLEMM P  S+KDR+G  +I DA + G ++PG  V+IE T+GNTGIGLA  A   G + I  +P   S E++ ++ A GA ++ T    GM+GA+QKA ++  +  NSY + QF+N  NP  +Y+T GPE+W+
Sbjct:    3 VITDITELIGNTPLLRLKNFDVPEGVAVYAKLEMMNPGGSIKDRLGDMLIRDALDSGKVKPG-GVIIEATAGNTGIGLALSARKYGLKAIFCVPEHFSREKQQIMQALGASIIHTPRQDGMQGAIQKAIQLETEIENSYCVLQFKNRVNPSTYYKTLGPEMWE 164          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CBS_DICDI (Cystathionine beta-synthase OS=Dictyostelium discoideum GN=cysB PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.521e-32
Identity = 74/165 (44.85%), Postives = 104/165 (63.03%), Query Frame = 1
Query:  142 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            +I  ++ + IG TPLV +N++       + AK E      SVKDRIG+ MI DAEE G I+ G++ LIEPTSGNTGIGLA  AA KGY++IIT+P  MS E+  VL A GAE++ T         +  +  A+++  + PNS++L Q+ NP+NP  HY+ T  E+
Sbjct:   31 LIMDNILDNIGGTPLVRVNKVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDT-LIEPTSGNTGIGLALTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRTPTEAAFDAPESHIGVAKKLNSEIPNSHILDQYGNPSNPLAHYDGTAEEL 194          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.293e-32
Identity = 75/161 (46.58%), Postives = 101/161 (62.73%), Query Frame = 1
Query:  157 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 639
            + + +G TPLV L R+       +  KLE   P  SVKDR   SMI  AE +G IRPG++ LIE TSGNTGI LA  AA KGY++I+ MP + + ER+  + A+GAEL+L     GM+GA   A++++ +     VL QF N  NP+ HY +TGPEIW+ T
Sbjct:    8 IADCVGNTPLVRLQRLPGETSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDT-LIEATSGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEGARDLADKLQ-REGRGKVLDQFANGDNPEAHYHSTGPEIWQQT 166          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CBS_RABIT (Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 9.581e-32
Identity = 81/166 (48.80%), Postives = 102/166 (61.45%), Query Frame = 1
Query:  145 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            I  D+ + IG TP+V +N+I    G    + AK E      SVKDRI   MI DAE  G +RPG+++ IEPTSGNTGIGLA  AA KGYR II MP  MSLE+  VL A GAE+V T   AR    +  V  A  ++ + PNS++L Q+ N +NP  HY+TT  EI
Sbjct:   76 ILPDILQKIGDTPMVRINKIGKNFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSLEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKQEIPNSHILDQYRNASNPLAHYDTTAEEI 240          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSM_PSESY (Cysteine synthase B (Fragment) OS=Pseudomonas syringae pv. syringae GN=cysM PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.251e-31
Identity = 76/161 (47.20%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  157 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 639
            + + +G TPLV L R+       +  KLE   P  SVKDR   SMI  AE +G I PG++ LIE TSGNTGI LA  AA KGYR+I+ MP + S ER+  + A+GAEL+      GM+GA   AE ++ +     VL QF N  NP+ HY +TGPEIW+ T
Sbjct:    8 IADCVGNTPLVRLQRMAGNTSNTLLLKLEGNNPAGSVKDRPALSMITRAELRGQIHPGDT-LIEATSGNTGIALAMAAAIKGYRMILIMPDNSSAERKAAMTAYGAELISVSKDDGMEGARDLAERMQAE-GRGKVLDQFANGDNPEAHYTSTGPEIWRQT 166          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CBS_YEAST (Cystathionine beta-synthase OS=Saccharomyces cerevisiae GN=CYS4 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.755e-31
Identity = 74/163 (45.40%), Postives = 100/163 (61.35%), Query Frame = 1
Query:  154 DVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            +V +L+G TPL+ L ++    G   +I AKLE+  P  S+KDRI  SM+ +AE  G I P  S LIEPTSGNTGIGLA + A KGYR IIT+P  MS E+  VL A GAE++ T  A      +  +  A+++  + P + +L Q+ N  NP+ HY  TG EI
Sbjct:   13 NVIDLVGNTPLIALKKLPKALGIKPQIYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTLIEPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEIIRTPTAAAWDSPESHIGVAKKLEKEIPGAVILDQYNNMMNPEAHYFGTGREI 175          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 6.211e-31
Identity = 79/166 (47.59%), Postives = 101/166 (60.84%), Query Frame = 1
Query:  145 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            I  D+   IG TP+V +NRI    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA KGYR II MP  MS+E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+ T  EI
Sbjct:   73 ILPDILRKIGNTPMVRINRISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDDTAEEI 237          
The following BLAST results are available for this feature:
BLAST of CK938529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_BUCAP3.075e-3854.22Cysteine synthase OS=Buchnera aphidicola subsp. Sc... [more]
CYSM_ECOLI1.209e-3450.94Cysteine synthase B OS=Escherichia coli (strain K1... [more]
CYSM_SALTY1.579e-3450.94Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
MCCA_BACSU1.478e-3243.56O-acetylserine dependent cystathionine beta-syntha... [more]
CBS_DICDI2.521e-3244.85Cystathionine beta-synthase OS=Dictyostelium disco... [more]
CYSM_PSEAE3.293e-3246.58Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]
CBS_RABIT9.581e-3248.80Cystathionine beta-synthase OS=Oryctolagus cunicul... [more]
CYSM_PSESY1.251e-3147.20Cysteine synthase B (Fragment) OS=Pseudomonas syri... [more]
CBS_YEAST4.755e-3145.40Cystathionine beta-synthase OS=Saccharomyces cerev... [more]
CBS_RAT6.211e-3147.59Cystathionine beta-synthase OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_F08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938529 ID=CK938529; Name=CK938529; organism=Citrus sinensis; type=EST; length=639bp
GGGGGACAGNNNNTTTATTTGTTTTTCAATTTTCTACTGTTTTCCAGCTG
CCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCGCTTG
TAACTTGAAAAAAAGAAAAAAAAATGGTGGAGGAGAAGTCCGTGATTGCG
AAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCAACCG
CATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATGATGG
AACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGCTGAT
GCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTGAGCC
TACCAGCGGTAATACTGGCATAGGGTTGGCATTCATGGCAGCTGCTAAGG
GTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAGAAGA
ATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTGCCAG
GGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAGACAC
CGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAAGATC
CACTACGAGACTACCGGACCAGAGATCTGGAAAGGCACC
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