CK938529

Overview
NameCK938529
Unique NameCK938529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2063 contig Csv1_Contig2063:103..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSM_HELPJ (Cysteine synthase OS=Helicobacter pylori J99 GN=cysM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.794e-23
Identity = 61/164 (37.20%), Postives = 94/164 (57.32%), Query Frame = 1
Query:  142 VIAKDVTELIGKTPLVYLNR--IVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            +I   + + IG+TP+    R        + I AKLE + P  SVKDR+G  +I +A     I    + +IEPT+GNTGI LA +A     + I  +P   S E++ ++ A GA ++ T  + G+ GA++K++E+ +  P+SY+  QFENP NP  +Y T  PEI
Sbjct:    1 MILTAMQDAIGRTPIFKFTRKDYPIPLKSAIYAKLEHLNPGGSVKDRLGQYLIKEAFRTRKIT-STTTIIEPTAGNTGIALALVAIKHHLKTIFVVPKKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLAPEI 163          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK_YEAST (Putative cysteine synthase OS=Saccharomyces cerevisiae GN=YGR012W PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.811e-22
Identity = 67/167 (40.12%), Postives = 94/167 (56.29%), Query Frame = 1
Query:  157 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKG-LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL------VLTDPARGMKGAVQKAEEIRDKTPN---SYVLQQFENPANPKIHYETTGPEI 627
            V ELIG TPLV +  +       I AKLE+  P  S KDR+  ++I  AEE G L+R     + E TSG+TGI +A +  A GYR  I++P   SLE+  +L + GA +       + DP + +  A +   E++ K+ N   +    QFEN AN K+HY+TTGPEI
Sbjct:   49 VEELIGNTPLVKIRSLTKATGVNIYAKLELCNPAGSAKDRVALNIIKTAEELGELVRGEPGWVFEGTSGSTGISIAVVCNALGYRAHISLPDDTSLEKLALLESLGATVNKVKPASIVDPNQYVNAAKKACNELK-KSGNGIRAVFADQFENEANWKVHYQTTGPEI 214          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK2_SCHPO (Cysteine synthase 2 OS=Schizosaccharomyces pombe GN=cys12 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.453e-19
Identity = 61/173 (35.26%), Postives = 88/173 (50.87%), Query Frame = 1
Query:  145 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES-VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL------VLTDPARGMKGAVQKA--EEIRDKTP-NSYVLQQFENPANPKIHYETTGPEIWK 633
            I   V  LIG T +V +  +       I AK E + P +S KDR+   MI  AEE G + P +S  + E T+G+TGI +A +  + GY   I MP+  S E+  +L   GA +       + DP   +  A + A    + +  P   Y   QFENPAN + H+ +TGPEIW+
Sbjct:   42 IVNGVEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHVQRVTPAPIVDPNHFVNTARRNAANHTVDESIPGKGYFANQFENPANWQAHFNSTGPEIWR 214          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSK_DICDI (Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.072e-18
Identity = 56/170 (32.94%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  139 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA---VQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 639
            S I+  + E +G TPL+ +  + +     I  K E M P  S KDR+   +I D E+KGL++ G S ++E T+G+TGI L  +  ++GY + + +P ++S E+  +L   GAE  +  P  GM  A   +  A +       ++   QF+N +N   HY  T  EIW+ T
Sbjct:   36 SGISNGIIETVGNTPLIRIKSLSEATGCEIYGKAEFMNPGGSPKDRVAREIILDGEKKGLLKKG-STIVEATAGSTGISLTMLGKSRGYNVQLFIPDNVSKEKVDLLEMLGAETKIV-PIVGMNNANHFMHCAYQRCLGDDMAFYANQFDNLSNFNAHYNGTAKEIWEQT 203          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: CYSM_RALME (Cysteine synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=cysM PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.010e-14
Identity = 50/166 (30.12%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  142 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA--ELVLTDPARG--MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 627
            ++   + E IG TPLV L R+     A + AKLE++ P  SVKDR    ++     +G I P  S +IE +SGN  I LA +   KG R    +   +S     +L  +GA  E V    ++G  ++  +++  ++  +  ++  + Q+ NP N + HY     EI
Sbjct:    1 MVCNSIIESIGNTPLVQLRRLFGRADAEVFAKLELLNPAGSVKDRPARYIVEKGLTEGAIGP-HSHVIESSSGNLAIALAMICGLKGLRFTAVVDPKISPTNLKILRCYGAGIEQVTAKDSQGGYLETRIERVRQMLREQRDAIWINQYANPLNWESHYYGEAAEI 165          
BLAST of CK938529 vs. ExPASy Swiss-Prot
Match: Y4XP_RHISN (Putative cysteine synthase OS=Rhizobium sp. (strain NGR234) GN=NGR_a00730 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.621e-13
Identity = 51/152 (33.55%), Postives = 84/152 (55.26%), Query Frame = 1
Query:  157 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL--VLTDPARGMKGAVQK---AEEIRDKTPNSYVLQQFENPANPK 597
            VT+LIG+TP++ ++  V G  A +  K+E   P  S+KDR+  SM+  A + G + PG ++ +E +SGNTG GLA  A   G R I  +    + ++  ++ A GAE+  V  D        V++   A ++  + P +  + Q +NPANP+
Sbjct:    6 VTQLIGQTPVMSID--VPGRNATLVLKIEKNNPGGSMKDRMARSMVIAALQDGRLPPGGTI-VESSSGNTGTGLALAALEFGLRFIAVVDHHAAPDKIRMMRALGAEIRYVEGDFREDEVAVVERQRLAAQLGAQLPGALFMNQSDNPANPE 154          
The following BLAST results are available for this feature:
BLAST of CK938529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSM_HELPJ2.794e-2337.20Cysteine synthase OS=Helicobacter pylori J99 GN=cy... [more]
CYSK_YEAST1.811e-2240.12Putative cysteine synthase OS=Saccharomyces cerevi... [more]
CYSK2_SCHPO5.453e-1935.26Cysteine synthase 2 OS=Schizosaccharomyces pombe G... [more]
CYSK_DICDI2.072e-1832.94Cysteine synthase OS=Dictyostelium discoideum GN=c... [more]
CYSM_RALME9.010e-1430.12Cysteine synthase OS=Ralstonia metallidurans (stra... [more]
Y4XP_RHISN2.621e-1333.55Putative cysteine synthase OS=Rhizobium sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_F08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938529 ID=CK938529; Name=CK938529; organism=Citrus sinensis; type=EST; length=639bp
GGGGGACAGNNNNTTTATTTGTTTTTCAATTTTCTACTGTTTTCCAGCTG
CCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCGCTTG
TAACTTGAAAAAAAGAAAAAAAAATGGTGGAGGAGAAGTCCGTGATTGCG
AAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCAACCG
CATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATGATGG
AACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGCTGAT
GCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTGAGCC
TACCAGCGGTAATACTGGCATAGGGTTGGCATTCATGGCAGCTGCTAAGG
GTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAGAAGA
ATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTGCCAG
GGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAGACAC
CGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAAGATC
CACTACGAGACTACCGGACCAGAGATCTGGAAAGGCACC
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