CN187751
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1) HSP 1 Score: 348.977 bits (894), Expect = 2.611e-96 Identity = 170/210 (80.95%), Postives = 180/210 (85.71%), Query Frame = 2
Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
VGN+ ELYCLEHGI PDG MP D T+G DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T
Sbjct: 16 VGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 24.6386 bits (52), Expect = 2.611e-96 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query: 628 YTNLNRLISQI 660
YTNLNRL+SQ+
Sbjct: 224 YTNLNRLVSQV 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1) HSP 1 Score: 348.977 bits (894), Expect = 2.611e-96 Identity = 170/210 (80.95%), Postives = 180/210 (85.71%), Query Frame = 2
Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
VGN+ ELYCLEHGI PDG MP D T+G DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T
Sbjct: 16 VGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 24.6386 bits (52), Expect = 2.611e-96 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query: 628 YTNLNRLISQI 660
YTNLNRL+SQ+
Sbjct: 224 YTNLNRLVSQV 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1) HSP 1 Score: 348.591 bits (893), Expect = 3.407e-96 Identity = 170/210 (80.95%), Postives = 179/210 (85.24%), Query Frame = 2
Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
VGN+ ELYCLEHGI PDG MP D T+G DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T
Sbjct: 16 VGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 24.6386 bits (52), Expect = 3.407e-96 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query: 628 YTNLNRLISQI 660
YTNLNRL+SQ+
Sbjct: 224 YTNLNRLVSQV 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA2_HORVU (Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1) HSP 1 Score: 348.591 bits (893), Expect = 3.407e-96 Identity = 169/210 (80.48%), Postives = 180/210 (85.71%), Query Frame = 2
Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
VGN+ ELYCLEHGI PDG MP D T+G DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLSDNCTGLQGFLVFNAV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDV++LLDNEAIYDICRRSLDIE +T
Sbjct: 16 VGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 24.6386 bits (52), Expect = 3.407e-96 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query: 628 YTNLNRLISQI 660
YTNLNRL+SQ+
Sbjct: 224 YTNLNRLVSQV 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1) HSP 1 Score: 347.436 bits (890), Expect = 7.564e-96 Identity = 168/210 (80.00%), Postives = 180/210 (85.71%), Query Frame = 2
Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
VGN+ ELYCLEHGI PDG MP D T+G DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLSDNCTGLQGFLVFNAV VDYG+KSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDV++LLDNEAIYDICRRSLDIE +T
Sbjct: 16 VGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGRKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 24.6386 bits (52), Expect = 7.564e-96 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query: 628 YTNLNRLISQI 660
YTNLNRL+SQ+
Sbjct: 224 YTNLNRLVSQV 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1) HSP 1 Score: 346.665 bits (888), Expect = 1.287e-95 Identity = 169/210 (80.48%), Postives = 182/210 (86.67%), Query Frame = 2
Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
VGN+ ELYCLEHGI PDG MPSD T+G DAFNTFFSET AG+HVPRAVF+DLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVF+AV X VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDV+VLLDNEAIYDICRRSLDIE +T
Sbjct: 16 VGNARWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGXTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 24.6386 bits (52), Expect = 1.287e-95 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query: 628 YTNLNRLISQI 660
YTNLNRL+SQ+
Sbjct: 224 YTNLNRLVSQV 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1) HSP 1 Score: 346.665 bits (888), Expect = 1.287e-95 Identity = 168/210 (80.00%), Postives = 180/210 (85.71%), Query Frame = 2
Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
VGN+ ELYCLEHGI PDG MPSD T+G DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDV++LLDNEAIYDICRRSL IE +T
Sbjct: 16 VGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYT 225 HSP 2 Score: 24.6386 bits (52), Expect = 1.287e-95 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query: 628 YTNLNRLISQI 660
YTNLNRL+SQ+
Sbjct: 224 YTNLNRLVSQV 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1) HSP 1 Score: 347.051 bits (889), Expect = 1.679e-95 Identity = 168/210 (80.00%), Postives = 180/210 (85.71%), Query Frame = 2
Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
VGN+ ELYCLEHGI PDG MPSD TIG DAFNTFFSET AG+HVPR VF+DLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV VDYGKKSKLGFT+YPSPQVSTAVVEPYNSVLSTHSLLEHTDV+V+LDNEA+YDICRRSLDIE +T
Sbjct: 16 VGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVSVMLDNEAVYDICRRSLDIERPTYT 225 HSP 2 Score: 23.8682 bits (50), Expect = 1.679e-95 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query: 628 YTNLNRLISQI 660
YTNLNRLI+Q+
Sbjct: 224 YTNLNRLIAQV 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1) HSP 1 Score: 346.28 bits (887), Expect = 1.679e-95 Identity = 170/210 (80.95%), Postives = 179/210 (85.24%), Query Frame = 2
Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
VGN+ ELYCLEHGI DG MP D TIG DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T
Sbjct: 16 VGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 24.6386 bits (52), Expect = 1.679e-95 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query: 628 YTNLNRLISQI 660
YTNLNRL+SQ+
Sbjct: 224 YTNLNRLVSQV 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1) HSP 1 Score: 345.895 bits (886), Expect = 2.191e-95 Identity = 169/210 (80.48%), Postives = 179/210 (85.24%), Query Frame = 2
Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
VGN+ ELYCLEHGI DG MP D TIG DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVA+LLDNEAIYDICRRSLDIE +T
Sbjct: 16 VGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAILLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 24.6386 bits (52), Expect = 2.191e-95 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query: 628 YTNLNRLISQI 660
YTNLNRL+SQ+
Sbjct: 224 YTNLNRLVSQV 234 The following BLAST results are available for this feature:
BLAST of CN187751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 420
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187751 ID=CN187751; Name=CN187751; organism=Citrus sinensis; type=EST; length=670bpback to top |