CN187751
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 1.082e-45 Identity = 86/134 (64.18%), Postives = 107/134 (79.85%), Query Frame = 2 Query: 233 ISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYG-KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 + GKEDAANN+ARGHYTVGKE++++C DR+RKL+D C GLQGFLVF++V ++YG KKSKL F +YPSPQVST+VVEPYNSVLSTHSLLEHTDV+ +LDNEAIY+IC++SLDIE+ +T Sbjct: 1 LRGKEDAANNYARGHYTVGKELIEVCADRIRKLADQCEGLQGFLVFHSVGGGTGSGFGSLLLQRLALEYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKKSLDIEKPTYT 134 HSP 2 Score: 23.8682 bits (50), Expect = 1.082e-45 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLI+Q+ Sbjct: 133 YTNLNRLIAQV 143
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 4.805e-45 Identity = 89/209 (42.58%), Postives = 132/209 (63.16%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 +G+ E+ C EHGI P G + S++ + + D N +++E S GR+VPRAV +DLEP +D V+TG + Q+F P+ I G+ A NN+A+GHYT G E++D LD VRK ++NC LQGF V +++ +Y + L F+++PSP+VS VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + +F Sbjct: 16 IGSKFWEVVCDEHGIDPTGQVLSESDLQL--DRINVYYNEASGGRYVPRAVLMDLEPGTMDSVKTGPHGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCECLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSGHQLVENADECMVLDNEALYDICFRTLKLSTPSF 222
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.070e-44 Identity = 88/209 (42.11%), Postives = 128/209 (61.24%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 +G E+ C EHGI P G D + + + N +++E S GR+VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK ++NC LQGF V +++ +Y + L F+++PSP+VS VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + +F Sbjct: 14 IGAKFWEVVCAEHGIDPTGRYGGDTDLQL--ERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 220
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.398e-44 Identity = 87/209 (41.63%), Postives = 130/209 (62.20%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 +G+ E+ C EHGI P G ++ + + + N +++E S GR+VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK ++NC LQGF V +++ +Y + L F+++PSP+VS VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + +F Sbjct: 16 IGSKFWEVVCDEHGIDPTGRYVGNSDLQL--ERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.826e-44 Identity = 86/209 (41.15%), Postives = 129/209 (61.72%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 +G+ E+ C EHG+ P G D+ + + N +++E S GR+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK ++NC LQGF V +++ +Y + L F+++PSP+VS VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + +F Sbjct: 16 IGSKFWEVICDEHGVDPTGRYNGDSA-DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSF 223
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 4.068e-44 Identity = 88/209 (42.11%), Postives = 128/209 (61.24%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 +G+ E+ C EHGI P G + + + + N +++E S GR VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK ++NC LQGF V +++ +Y + L F+++PSP+VS VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + +F Sbjct: 16 IGSKFWEVVCDEHGIDPTGRYAGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 4.068e-44 Identity = 87/209 (41.63%), Postives = 129/209 (61.72%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 +G+ E+ C EHGI P G ++ + + + N +++E S GR VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK ++NC LQGF V +++ +Y + L F+++PSP+VS VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + +F Sbjct: 7 IGSKFWEVVCDEHGIDPTGRYVGNSDLQL--ERVNVYYNEASCGRFVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 213
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 4.068e-44 Identity = 88/209 (42.11%), Postives = 128/209 (61.24%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 +G+ E+ C EHGI P G + + + + N +++E S GR VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK ++NC LQGF V +++ +Y + L F+++PSP+VS VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + +F Sbjct: 16 IGSKFWEVVCDEHGIDPTGRYIGSSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 4.068e-44 Identity = 87/209 (41.63%), Postives = 128/209 (61.24%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 +G E+ C EHGI G DN + + + N +++E S GR VPRAV +DLEP +D +R+G+Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK ++NC LQGF V +++ +Y + L F+++PSP+VS VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + +F Sbjct: 16 IGAKFWEVVCAEHGIDSTGRYEGDNVLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGTYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 5.312e-44 Identity = 88/209 (42.11%), Postives = 128/209 (61.24%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 +G E+ C EHGI P G ++ + + + N +++E S GR VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK ++NC LQGF V +++ +Y + L F+++PSP+VS VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + +F Sbjct: 16 IGAKFWEVVCDEHGIDPTGRYTGNSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222 The following BLAST results are available for this feature:
BLAST of CN187751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 420
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187751 ID=CN187751; Name=CN187751; organism=Citrus sinensis; type=EST; length=670bpback to top |