CN187751

Overview
NameCN187751
Unique NameCN187751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.082e-45
Identity = 86/134 (64.18%), Postives = 107/134 (79.85%), Query Frame = 2
Query:  233 ISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYG-KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
            + GKEDAANN+ARGHYTVGKE++++C DR+RKL+D C GLQGFLVF++V                 ++YG KKSKL F +YPSPQVST+VVEPYNSVLSTHSLLEHTDV+ +LDNEAIY+IC++SLDIE+  +T
Sbjct:    1 LRGKEDAANNYARGHYTVGKELIEVCADRIRKLADQCEGLQGFLVFHSVGGGTGSGFGSLLLQRLALEYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKKSLDIEKPTYT 134          

HSP 2 Score: 23.8682 bits (50), Expect = 1.082e-45
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  628 YTNLNRLISQI 660
            YTNLNRLI+Q+
Sbjct:  133 YTNLNRLIAQV 143          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.805e-45
Identity = 89/209 (42.58%), Postives = 132/209 (63.16%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            +G+   E+ C EHGI P G + S++ + +  D  N +++E S GR+VPRAV +DLEP  +D V+TG + Q+F P+  I G+  A NN+A+GHYT G E++D  LD VRK ++NC  LQGF V +++                  +Y  +  L F+++PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +   +F
Sbjct:   16 IGSKFWEVVCDEHGIDPTGQVLSESDLQL--DRINVYYNEASGGRYVPRAVLMDLEPGTMDSVKTGPHGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCECLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSGHQLVENADECMVLDNEALYDICFRTLKLSTPSF 222          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.070e-44
Identity = 88/209 (42.11%), Postives = 128/209 (61.24%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            +G    E+ C EHGI P G    D  + +  +  N +++E S GR+VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK ++NC  LQGF V +++                  +Y  +  L F+++PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +   +F
Sbjct:   14 IGAKFWEVVCAEHGIDPTGRYGGDTDLQL--ERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 220          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.398e-44
Identity = 87/209 (41.63%), Postives = 130/209 (62.20%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            +G+   E+ C EHGI P G    ++ + +  +  N +++E S GR+VPRA+ +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK ++NC  LQGF V +++                  +Y  +  L F+++PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +   +F
Sbjct:   16 IGSKFWEVVCDEHGIDPTGRYVGNSDLQL--ERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.826e-44
Identity = 86/209 (41.15%), Postives = 129/209 (61.72%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            +G+   E+ C EHG+ P G    D+   +  +  N +++E S GR+VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK ++NC  LQGF V +++                  +Y  +  L F+++PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +   +F
Sbjct:   16 IGSKFWEVICDEHGVDPTGRYNGDSA-DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSF 223          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.068e-44
Identity = 88/209 (42.11%), Postives = 128/209 (61.24%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            +G+   E+ C EHGI P G     + + +  +  N +++E S GR VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK ++NC  LQGF V +++                  +Y  +  L F+++PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +   +F
Sbjct:   16 IGSKFWEVVCDEHGIDPTGRYAGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.068e-44
Identity = 87/209 (41.63%), Postives = 129/209 (61.72%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            +G+   E+ C EHGI P G    ++ + +  +  N +++E S GR VPRA+ +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK ++NC  LQGF V +++                  +Y  +  L F+++PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +   +F
Sbjct:    7 IGSKFWEVVCDEHGIDPTGRYVGNSDLQL--ERVNVYYNEASCGRFVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 213          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.068e-44
Identity = 88/209 (42.11%), Postives = 128/209 (61.24%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            +G+   E+ C EHGI P G     + + +  +  N +++E S GR VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK ++NC  LQGF V +++                  +Y  +  L F+++PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +   +F
Sbjct:   16 IGSKFWEVVCDEHGIDPTGRYIGSSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.068e-44
Identity = 87/209 (41.63%), Postives = 128/209 (61.24%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            +G    E+ C EHGI   G    DN + +  +  N +++E S GR VPRAV +DLEP  +D +R+G+Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK ++NC  LQGF V +++                  +Y  +  L F+++PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +   +F
Sbjct:   16 IGAKFWEVVCAEHGIDSTGRYEGDNVLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGTYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.312e-44
Identity = 88/209 (42.11%), Postives = 128/209 (61.24%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            +G    E+ C EHGI P G    ++ + +  +  N +++E S GR VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK ++NC  LQGF V +++                  +Y  +  L F+++PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +   +F
Sbjct:   16 IGAKFWEVVCDEHGIDPTGRYTGNSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222          
The following BLAST results are available for this feature:
BLAST of CN187751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
TBA_DICPU1.082e-4564.18Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBB2_DAUCA4.805e-4542.58Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB2_PEA1.070e-4442.11Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB6_ARATH1.398e-4441.63Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB1_ARATH1.826e-4441.15Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB6_ORYSJ4.068e-4442.11Tubulin beta-6 chain OS=Oryza sativa subsp. japoni... [more]
TBB3_PEA4.068e-4441.63Tubulin beta-3 chain (Fragment) OS=Pisum sativum G... [more]
TBB3_GOSHI4.068e-4442.11Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB2_LUPAL4.068e-4441.63Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=... [more]
TBB6_MAIZE5.312e-4442.11Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187751 ID=CN187751; Name=CN187751; organism=Citrus sinensis; type=EST; length=670bp
GGTGGGGAATTCACCCTTGGAGCTTTATTGCCTAGAACATGGCATTCATC
CTGATGGCATGATGCCCAGTGACAATACAATAGGTGTAGCCCATGATGCC
TTCAATACATTCTTCAGTGAAACCAGTGCTGGCAGGCATGTGCCCAGAGC
TGTGTTTGTTGATCTTGAACCAACTGTCATTGATGAAGTTAGAACGGGTA
GCTACCGCCAGCTTTTCCACCCAGAGCAGCTTATCTCTGGCAAGGAAGAT
GCTGCTAACAATTTTGCAAGAGGGCATTATACTGTTGGGAAGGAAATTGT
GGATCTTTGCCTTGATCGTGTTCGAAAGTTATCTGATAACTGCACTGGGT
TGCAAGGGTTTTTGGTGTTCAATGCTGTTGGGGGTGGTACTGGTTCCGGT
CTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTATGGAAAGAAGTC
AAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTATCAACAGCAGTTG
TGGAGCCTTATAACAGTGTTCTGTCTACTCATTCCCTTCTTGAACACACA
GATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGACATCTGCAGGAG
ATCCCTGGATATTGAAGAGGCCAACTTTACACTAATTTGAATCGATTGAT
ATCTCAAATCCATATCATCT
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