CN187751

Overview
NameCN187751
Unique NameCN187751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 1.847e-91
Identity = 162/210 (77.14%), Postives = 176/210 (83.81%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
            VGN+  EL+CLEHGI PDG MPS+ TIG   DAFNTFFSET  G+HVPR VF+DL PTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLD +RKL+D CTGLQGFLVFN+V                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV+LDNEA+YDICRR+LDIE   +T
Sbjct:   16 VGNACWELFCLEHGIQPDGQMPSNKTIGGGDDAFNTFFSETGTGKHVPRCVFLDLGPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDGIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYT 225          

HSP 2 Score: 23.8682 bits (50), Expect = 1.847e-91
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  628 YTNLNRLISQI 660
            YTNLNRLI+Q+
Sbjct:  224 YTNLNRLIAQV 234          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 1.187e-90
Identity = 159/210 (75.71%), Postives = 177/210 (84.29%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
            VGN+  ELYCLEHGI PDG MPSD ++G   DAFNTFFSET AG+HVPRAVF+DLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDLCLDRVRKL+D CTGLQGFLVF++V                 VDYGKKSKL F +YPSPQVSTAVVEPYNSVLSTHSLLEHTDVA +LDNEAIYDIC+R+LDI+   +T
Sbjct:   16 VGNACWELYCLEHGIQPDGQMPSDKSVGYGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRVRKLADQCTGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAFMLDNEAIYDICKRALDIDRPTYT 225          

HSP 2 Score: 23.483 bits (49), Expect = 1.187e-90
Identity = 8/11 (72.73%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  628 YTNLNRLISQI 660
            YTNLNRL++Q+
Sbjct:  224 YTNLNRLVAQV 234          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 2.635e-90
Identity = 160/210 (76.19%), Postives = 175/210 (83.33%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
            +GN+  EL+CLEHGI PDG MPSD TIG   DAFNTFFSET AG+HVPR VF+DLEPTV+DEVRTG+YR LFHPEQLISGKEDAANNFARGHYT+GKEIVDL LDR+RKL+DNCTGLQGFL+FNAV                 VDYGKKSKL F  +PSPQVSTAVVEPYNSVLSTHSLLEHTDVAV+LDNEAIYDICRR+LDIE   +T
Sbjct:   16 IGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYT 225          

HSP 2 Score: 23.8682 bits (50), Expect = 2.635e-90
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  628 YTNLNRLISQI 660
            YTNLNRLI+Q+
Sbjct:  224 YTNLNRLIAQV 234          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 2.635e-90
Identity = 160/210 (76.19%), Postives = 175/210 (83.33%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
            +GN+  EL+CLEHGI PDG MPSD TIG   DAFNTFFSET AG+HVPR VF+DLEPTV+DEVRTG+YR LFHPEQLISGKEDAANNFARGHYT+GKEIVDL LDR+RKL+DNCTGLQGFL+FNAV                 VDYGKKSKL F  +PSPQVSTAVVEPYNSVLSTHSLLEHTDVAV+LDNEAIYDICRR+LDIE   +T
Sbjct:   16 IGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYT 225          

HSP 2 Score: 23.8682 bits (50), Expect = 2.635e-90
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  628 YTNLNRLISQI 660
            YTNLNRLI+Q+
Sbjct:  224 YTNLNRLIAQV 234          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 4.485e-90
Identity = 159/210 (75.71%), Postives = 176/210 (83.81%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
            VGN+  EL+CLEHGI PDG MPSD TIG   DAFNTFFSET AG+HVPRAV VDLEPTV DE+RTG+YRQLFHPEQ+ISGKEDAANNFARGHYT+GKEIVDL LDR+RKL+DNCTGLQGF+ F++V                 VDYGKKSKL FT+YPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV+LDNEA+YDICRR+LDIE   +T
Sbjct:   16 VGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVLVDLEPTVCDEIRTGTYRQLFHPEQIISGKEDAANNFARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFIGFHSVGGGTGSGLGSLLLERLSVDYGKKSKLCFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYT 225          

HSP 2 Score: 23.8682 bits (50), Expect = 4.485e-90
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  628 YTNLNRLISQI 660
            YTNLNRLI+Q+
Sbjct:  224 YTNLNRLIAQV 234          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 2.883e-89
Identity = 156/210 (74.29%), Postives = 174/210 (82.86%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
            VGN+  EL+CLEHGI PDG MPSD       DAFNTFFSET AG+HVPR VFVDLEPTV+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKE++D+CLDR+RKL+DNCTGLQGFL+F+AV                 VDYGKKSKL F  +PSPQVSTAVVEPYNSVLSTHSLLEHTDVA++LDNEAIYDICRR+LDIE   +T
Sbjct:   16 VGNACWELFCLEHGIQPDGQMPSDKASRANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYDICRRNLDIERPTYT 225          

HSP 2 Score: 23.8682 bits (50), Expect = 2.883e-89
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  628 YTNLNRLISQI 660
            YTNLNRLI+Q+
Sbjct:  224 YTNLNRLIAQV 234          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 9.248e-89
Identity = 155/209 (74.16%), Postives = 177/209 (84.69%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            VGN+  ELYCLEHGI PDG MPSD ++G   DAFNTFFSETS+G+HVPRA+F+DLEPTVIDE+RTG+YRQLFHPEQLI+GKEDAANN+ARGHYTVGKE+VDLCLDRVRKL+D C+GLQGFLVF++V                 VDYGKKSKL F +YPSPQVSTAVVEPYNSVLSTH LLEHTDVA +LDNEAIYD+C+RSLDIE  ++
Sbjct:   16 VGNACWELYCLEHGIKPDGQMPSDKSVGGGDDAFNTFFSETSSGKHVPRAIFLDLEPTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHGLLEHTDVAFMLDNEAIYDLCKRSLDIERPSY 224          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 3.514e-88
Identity = 153/209 (73.21%), Postives = 178/209 (85.17%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            VGN+  ELYCLEHGI+PDG MPSD ++G   DAFNTFFSETS+G+HVPRA+++DLEPTVIDE+RTG+YRQLFHPEQLI+GKEDAANN+ARGHYTVGKEIVDLCLDRVRKL+D C+GLQGFLVF++V                 VDYGKKSKL F +YPSPQVSTAVVEPYNSVLSTH LLEHTDVA +LDNEAIYD+C++SLDI+  ++
Sbjct:   16 VGNACWELYCLEHGINPDGQMPSDKSVGGGDDAFNTFFSETSSGKHVPRAIYLDLEPTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHGLLEHTDVAFMLDNEAIYDLCKKSLDIDRPSY 224          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 321.242 bits (822), Expect = 9.131e-88
Identity = 153/210 (72.86%), Postives = 173/210 (82.38%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
            VGN+  EL+CLEHGI PDG MP D       DAFNTFFSET AG+HVPR VFVDLEPTV+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKE++D+CLDR+RKL+DNCTGLQGFL+F+AV                 VDYGKKSKL F  +PSPQVSTAVVEPYNSVLSTHSLLEHTDVA++LDNEAIYDIC+++LDIE   +T
Sbjct:   16 VGNACWELFCLEHGIQPDGQMPPDQAGRANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYDICKKNLDIERPTYT 225          

HSP 2 Score: 23.8682 bits (50), Expect = 9.131e-88
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  628 YTNLNRLISQI 660
            YTNLNRLI+Q+
Sbjct:  224 YTNLNRLIAQV 234          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1C_BOVIN (Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 2.027e-87
Identity = 153/210 (72.86%), Postives = 174/210 (82.86%), Query Frame = 2
Query:    2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
            +GN+  ELYCLEHGI PDG MPSD TIG   D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANN+ARGHYT+GKEI+DL LDRVRKL+D CTGLQGFLVF++                  VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE   +T
Sbjct:   16 IGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225          

HSP 2 Score: 24.2534 bits (51), Expect = 2.027e-87
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  628 YTNLNRLISQI 660
            YTNLNRL+SQI
Sbjct:  224 YTNLNRLMSQI 234          
The following BLAST results are available for this feature:
BLAST of CN187751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
TBA2_STYLE1.847e-9177.14Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBAD_PHYPO1.187e-9075.71Tubulin alpha-1A chain OS=Physarum polycephalum GN... [more]
TBA_TOXGO2.635e-9076.19Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBA_NEOCA2.635e-9076.19Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBA_EUPVA4.485e-9075.71Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1[more]
TBA_PLAFK2.883e-8974.29Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBAE_PHYPO9.248e-8974.16Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]
TBAN_PHYPO3.514e-8873.21Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBA_PLAYO9.131e-8872.86Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA1C_BOVIN2.027e-8772.86Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187751 ID=CN187751; Name=CN187751; organism=Citrus sinensis; type=EST; length=670bp
GGTGGGGAATTCACCCTTGGAGCTTTATTGCCTAGAACATGGCATTCATC
CTGATGGCATGATGCCCAGTGACAATACAATAGGTGTAGCCCATGATGCC
TTCAATACATTCTTCAGTGAAACCAGTGCTGGCAGGCATGTGCCCAGAGC
TGTGTTTGTTGATCTTGAACCAACTGTCATTGATGAAGTTAGAACGGGTA
GCTACCGCCAGCTTTTCCACCCAGAGCAGCTTATCTCTGGCAAGGAAGAT
GCTGCTAACAATTTTGCAAGAGGGCATTATACTGTTGGGAAGGAAATTGT
GGATCTTTGCCTTGATCGTGTTCGAAAGTTATCTGATAACTGCACTGGGT
TGCAAGGGTTTTTGGTGTTCAATGCTGTTGGGGGTGGTACTGGTTCCGGT
CTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTATGGAAAGAAGTC
AAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTATCAACAGCAGTTG
TGGAGCCTTATAACAGTGTTCTGTCTACTCATTCCCTTCTTGAACACACA
GATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGACATCTGCAGGAG
ATCCCTGGATATTGAAGAGGCCAACTTTACACTAATTTGAATCGATTGAT
ATCTCAAATCCATATCATCT
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