CN187751

Overview
NameCN187751
Unique NameCN187751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12391 contig Csv1_Contig12391:186..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14
Identity = 51/187 (27.27%), Postives = 89/187 (47.59%), Query Frame = 2
Query:   74 NTIGVAHDAFNTFFSET-----------SAGRHVP---RAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDI 592
            N  G+  DA ++FF              S GR      RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    +  L+++RK ++ C  LQ F + +++                  ++ +  +    +YPS +    +  PYNS+L+   L EH D  + +DN++++DI
Sbjct:   32 NQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFDI 217          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 56/202 (27.72%), Postives = 97/202 (48.02%), Query Frame = 2
Query:   35 EHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEV-RTGSYRQLFHPEQLISGKED--AANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVST-AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            EHGI+  G    ++ +   +D  +  F +     +VPRAV VDLEP VI+ + ++ ++  LF+ + +        A NN+A G Y  G+E+ +  +D + + ++N   L G L  ++V                   + KK    ++++ +   ST  VV PYN VLS   L+E+ D  V+LDN A++ +       +   F
Sbjct:   30 EHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTF 227          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB1_DAUCA (Tubulin beta-1 chain (Fragment) OS=Daucus carota GN=TUBB1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 2
Query:  434 DYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            +Y  +  L F+++PSP+VS  VVEPYN+ LS H L+E+ DV ++LDNEA+YDIC R+L +   +F
Sbjct:   26 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADVCMVLDNEALYDICFRTLKLTTPSF 90          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13
Identity = 49/199 (24.62%), Postives = 89/199 (44.72%), Query Frame = 2
Query:   50 PDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEV-----RTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
            P G+            +   FFSE   G  + RAV VD+EP VI++      ++G ++   H       KE + NN+A G+   G    +  ++ ++K  + C  L GF +  ++                   Y    K+   I+P       +V+ YNSVL+   L   +D  ++ +N+AI+ IC + ++I++ +F+
Sbjct:   30 PQGLCSERENEAYQASSKERFFSEEENGVSIARAVLVDMEPKVINQTLSKAAQSGQWKYAQH--SCFCQKEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPYG-TGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFS 225          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13
Identity = 42/158 (26.58%), Postives = 80/158 (50.63%), Query Frame = 2
Query:  161 DLEPTVIDEVRTGSYRQLFHPEQLISGKED--AANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            DLEP V+  ++   Y+ +++PE     K+   A NN+  G Y++G+++ +   D + + +D    L+GF++ +++                   + KK    ++++P+ Q    VV+PYNS+LS   L ++ D  V+LDN A+  I    L +   +F
Sbjct:    3 DLEPRVLHSIQASPYKNIYNPENFYIHKDGTGAGNNWGMG-YSMGEQVHEDIWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSF 159          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 45/177 (25.42%), Postives = 82/177 (46.33%), Query Frame = 2
Query:  110 FFSETSAGRHVPRAVFVDLEPTVIDEVRTG---SYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
            FFSE   G  + RAV VD+EP VI++  +    S R  +        K+ + NN+A G+   G    +  +D +RK  + C    GF +  ++                   Y    K+   I+P       +V+ YNS+L+   L   +D  ++ +N+A++ IC + ++I++ +F+
Sbjct:   50 FFSEEENGVPIARAVLVDMEPKVINQTLSKAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFS 225          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 46/179 (25.70%), Postives = 85/179 (47.49%), Query Frame = 2
Query:  110 FFSETSAGRHVPRAVFVDLEPTVIDEV-----RTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631
            FFSE   G  + RAV VD+EP VI+++     ++G ++   H       K+ + NN+A G+   G    +  ++ +RK  + C    GF +  ++                   Y    K+   I+P       +V+ YNS+L+   L   +D  +L +N+AI+ IC + ++I++ +F+
Sbjct:   50 FFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHA--CFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFS 225          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 46/162 (28.40%), Postives = 83/162 (51.23%), Query Frame = 2
Query:  110 FFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQ--LISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLG-FTIYPSPQ-VSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAI 583
            FF+ + +  + PR++ +D+EP+VI   ++ S   +F+P    L +    AANN+  G Y  G E  +  L+ + +  D C  L  F +F++V                   YG K  L  F+I+PS +  S  VV+PYN++L+   L++++D   +  N+++
Sbjct:   80 FFTLSDSNTYTPRSILIDMEPSVI--AKSTSALPMFNPRNVHLSNQGNGAANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSL 238          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 47/178 (26.40%), Postives = 81/178 (45.51%), Query Frame = 2
Query:  110 FFSETSAGRHVPRAVFVDLEPTVIDEV-----RTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            FF E   G  V RAV VD+EP V+ +      R+G ++  +      S K+   NN+A G+   G +  D+ +D VRK  + C  L GF    ++                   Y     L   I+P       +V+ YNS+L+   L   +D  ++ +N+ I+ +C + ++I++ +F
Sbjct:   50 FFHEEECGDLVTRAVLVDMEPKVVSKTLSMAGRSGKWK--YDISSQFSQKQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMNIKQISF 224          
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 43/176 (24.43%), Postives = 81/176 (46.02%), Query Frame = 2
Query:  110 FFSETSAGRHVPRAVFVDLEPTVIDEVRTG---SYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628
            FF E   G  V RAV VD+EP VI++  +    S R  +        K+ + NN+A G+   G +  +  ++ ++   + C  L GF +  ++                   Y    K+   I+P       +V+ YNS+L+   L   +D  ++ +N+A++ IC + ++I++ +F
Sbjct:   50 FFREEENGVPVARAVLVDMEPKVINQTLSKAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISF 224          
The following BLAST results are available for this feature:
BLAST of CN187751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
TBE_MOUSE1.154e-1427.27Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_CAEEL4.386e-1427.72Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBB1_DAUCA2.177e-1350.77Tubulin beta-1 chain (Fragment) OS=Daucus carota G... [more]
TBD_CANFA4.850e-1324.62Tubulin delta chain OS=Canis familiaris GN=TUBD1 P... [more]
TBG_COCHE6.334e-1326.58Tubulin gamma chain (Fragment) OS=Cochliobolus het... [more]
TBD_MACFA1.411e-1225.42Tubulin delta chain OS=Macaca fascicularis GN=TUBD... [more]
TBD_HUMAN3.143e-1225.70Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 ... [more]
TBG_CANAL5.362e-1228.40Tubulin gamma chain OS=Candida albicans GN=TUB4 PE... [more]
TBD_XENTR7.003e-1226.40Tubulin delta chain OS=Xenopus tropicalis GN=tubd1... [more]
TBD_MOUSE7.743e-1124.43Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187751 ID=CN187751; Name=CN187751; organism=Citrus sinensis; type=EST; length=670bp
GGTGGGGAATTCACCCTTGGAGCTTTATTGCCTAGAACATGGCATTCATC
CTGATGGCATGATGCCCAGTGACAATACAATAGGTGTAGCCCATGATGCC
TTCAATACATTCTTCAGTGAAACCAGTGCTGGCAGGCATGTGCCCAGAGC
TGTGTTTGTTGATCTTGAACCAACTGTCATTGATGAAGTTAGAACGGGTA
GCTACCGCCAGCTTTTCCACCCAGAGCAGCTTATCTCTGGCAAGGAAGAT
GCTGCTAACAATTTTGCAAGAGGGCATTATACTGTTGGGAAGGAAATTGT
GGATCTTTGCCTTGATCGTGTTCGAAAGTTATCTGATAACTGCACTGGGT
TGCAAGGGTTTTTGGTGTTCAATGCTGTTGGGGGTGGTACTGGTTCCGGT
CTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTATGGAAAGAAGTC
AAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTATCAACAGCAGTTG
TGGAGCCTTATAACAGTGTTCTGTCTACTCATTCCCTTCTTGAACACACA
GATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGACATCTGCAGGAG
ATCCCTGGATATTGAAGAGGCCAACTTTACACTAATTTGAATCGATTGAT
ATCTCAAATCCATATCATCT
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