CN187751
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14 Identity = 51/187 (27.27%), Postives = 89/187 (47.59%), Query Frame = 2 Query: 74 NTIGVAHDAFNTFFSET-----------SAGRHVP---RAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDI 592 N G+ DA ++FF S GR RAV +D+E V++E+ G R +F +QLI+ + NN+A GH G + L+++RK ++ C LQ F + +++ ++ + + +YPS + + PYNS+L+ L EH D + +DN++++DI Sbjct: 32 NQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFDI 217
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14 Identity = 56/202 (27.72%), Postives = 97/202 (48.02%), Query Frame = 2 Query: 35 EHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEV-RTGSYRQLFHPEQLISGKED--AANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVST-AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 EHGI+ G ++ + +D + F + +VPRAV VDLEP VI+ + ++ ++ LF+ + + A NN+A G Y G+E+ + +D + + ++N L G L ++V + KK ++++ + ST VV PYN VLS L+E+ D V+LDN A++ + + F Sbjct: 30 EHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTF 227
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBB1_DAUCA (Tubulin beta-1 chain (Fragment) OS=Daucus carota GN=TUBB1 PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13 Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 2 Query: 434 DYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 +Y + L F+++PSP+VS VVEPYN+ LS H L+E+ DV ++LDNEA+YDIC R+L + +F Sbjct: 26 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADVCMVLDNEALYDICFRTLKLTTPSF 90
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13 Identity = 49/199 (24.62%), Postives = 89/199 (44.72%), Query Frame = 2 Query: 50 PDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEV-----RTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 P G+ + FFSE G + RAV VD+EP VI++ ++G ++ H KE + NN+A G+ G + ++ ++K + C L GF + ++ Y K+ I+P +V+ YNSVL+ L +D ++ +N+AI+ IC + ++I++ +F+ Sbjct: 30 PQGLCSERENEAYQASSKERFFSEEENGVSIARAVLVDMEPKVINQTLSKAAQSGQWKYAQH--SCFCQKEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPYG-TGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFS 225
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13 Identity = 42/158 (26.58%), Postives = 80/158 (50.63%), Query Frame = 2 Query: 161 DLEPTVIDEVRTGSYRQLFHPEQLISGKED--AANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 DLEP V+ ++ Y+ +++PE K+ A NN+ G Y++G+++ + D + + +D L+GF++ +++ + KK ++++P+ Q VV+PYNS+LS L ++ D V+LDN A+ I L + +F Sbjct: 3 DLEPRVLHSIQASPYKNIYNPENFYIHKDGTGAGNNWGMG-YSMGEQVHEDIWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSF 159
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12 Identity = 45/177 (25.42%), Postives = 82/177 (46.33%), Query Frame = 2 Query: 110 FFSETSAGRHVPRAVFVDLEPTVIDEVRTG---SYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 FFSE G + RAV VD+EP VI++ + S R + K+ + NN+A G+ G + +D +RK + C GF + ++ Y K+ I+P +V+ YNS+L+ L +D ++ +N+A++ IC + ++I++ +F+ Sbjct: 50 FFSEEENGVPIARAVLVDMEPKVINQTLSKAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFS 225
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12 Identity = 46/179 (25.70%), Postives = 85/179 (47.49%), Query Frame = 2 Query: 110 FFSETSAGRHVPRAVFVDLEPTVIDEV-----RTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 FFSE G + RAV VD+EP VI+++ ++G ++ H K+ + NN+A G+ G + ++ +RK + C GF + ++ Y K+ I+P +V+ YNS+L+ L +D +L +N+AI+ IC + ++I++ +F+ Sbjct: 50 FFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHA--CFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFS 225
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12 Identity = 46/162 (28.40%), Postives = 83/162 (51.23%), Query Frame = 2 Query: 110 FFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQ--LISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLG-FTIYPSPQ-VSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAI 583 FF+ + + + PR++ +D+EP+VI ++ S +F+P L + AANN+ G Y G E + L+ + + D C L F +F++V YG K L F+I+PS + S VV+PYN++L+ L++++D + N+++ Sbjct: 80 FFTLSDSNTYTPRSILIDMEPSVI--AKSTSALPMFNPRNVHLSNQGNGAANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSL 238
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12 Identity = 47/178 (26.40%), Postives = 81/178 (45.51%), Query Frame = 2 Query: 110 FFSETSAGRHVPRAVFVDLEPTVIDEV-----RTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 FF E G V RAV VD+EP V+ + R+G ++ + S K+ NN+A G+ G + D+ +D VRK + C L GF ++ Y L I+P +V+ YNS+L+ L +D ++ +N+ I+ +C + ++I++ +F Sbjct: 50 FFHEEECGDLVTRAVLVDMEPKVVSKTLSMAGRSGKWK--YDISSQFSQKQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMNIKQISF 224
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11 Identity = 43/176 (24.43%), Postives = 81/176 (46.02%), Query Frame = 2 Query: 110 FFSETSAGRHVPRAVFVDLEPTVIDEVRTG---SYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 FF E G V RAV VD+EP VI++ + S R + K+ + NN+A G+ G + + ++ ++ + C L GF + ++ Y K+ I+P +V+ YNS+L+ L +D ++ +N+A++ IC + ++I++ +F Sbjct: 50 FFREEENGVPVARAVLVDMEPKVINQTLSKAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISF 224 The following BLAST results are available for this feature:
BLAST of CN187751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 420
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187751 ID=CN187751; Name=CN187751; organism=Citrus sinensis; type=EST; length=670bpback to top |