CN187751
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1C_RAT (Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 2.644e-87 Identity = 151/210 (71.90%), Postives = 174/210 (82.86%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 IGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 2.644e-87 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1C_MOUSE (Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 2.644e-87 Identity = 151/210 (71.90%), Postives = 174/210 (82.86%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 IGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 2.644e-87 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1C_HUMAN (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 2.644e-87 Identity = 151/210 (71.90%), Postives = 174/210 (82.86%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 IGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 2.644e-87 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1C_CRIGR (Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 2.644e-87 Identity = 151/210 (71.90%), Postives = 174/210 (82.86%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 IGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 2.644e-87 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2) HSP 1 Score: 317.775 bits (813), Expect = 3.449e-87 Identity = 151/210 (71.90%), Postives = 173/210 (82.38%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 IGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 3.449e-87 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1) HSP 1 Score: 318.931 bits (816), Expect = 4.499e-87 Identity = 152/210 (72.38%), Postives = 173/210 (82.38%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTV+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDL LDRVRKLSD CTGLQGFL+F++ VDYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 IGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 23.8682 bits (50), Expect = 4.499e-87 Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLI QI Sbjct: 224 YTNLNRLIGQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1A_RAT (Tubulin alpha-1A chain OS=Rattus norvegicus GN=Tuba1a PE=1 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 7.655e-87 Identity = 151/210 (71.90%), Postives = 174/210 (82.86%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 IGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 23.8682 bits (50), Expect = 7.655e-87 Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLI QI Sbjct: 224 YTNLNRLIGQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1A_PANTR (Tubulin alpha-1A chain OS=Pan troglodytes GN=TUBA1A PE=2 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 7.655e-87 Identity = 151/210 (71.90%), Postives = 174/210 (82.86%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 IGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 23.8682 bits (50), Expect = 7.655e-87 Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLI QI Sbjct: 224 YTNLNRLIGQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1A_MOUSE (Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a PE=1 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 7.655e-87 Identity = 151/210 (71.90%), Postives = 174/210 (82.86%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 IGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 23.8682 bits (50), Expect = 7.655e-87 Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLI QI Sbjct: 224 YTNLNRLIGQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1A_HUMAN (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 7.655e-87 Identity = 151/210 (71.90%), Postives = 174/210 (82.86%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 IGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 23.8682 bits (50), Expect = 7.655e-87 Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLI QI Sbjct: 224 YTNLNRLIGQI 234 The following BLAST results are available for this feature:
BLAST of CN187751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 420
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187751 ID=CN187751; Name=CN187751; organism=Citrus sinensis; type=EST; length=670bpback to top |