CN187751
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 9.154e-85 Identity = 146/210 (69.52%), Postives = 171/210 (81.43%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD T G D+FNTFFSET AG+HVPRA+FVDLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+D+ LDR RKL+D CTGLQGFL+F++ VDYGKKSKL F +YP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE ++T Sbjct: 10 MGNACWELYCLEHGIQPDGQMPSDKTCGGGDDSFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGIYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDIVLDRTRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYT 219 HSP 2 Score: 23.8682 bits (50), Expect = 9.154e-85 Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLI QI Sbjct: 218 YTNLNRLIGQI 228
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1) HSP 1 Score: 310.842 bits (795), Expect = 1.194e-84 Identity = 144/210 (68.57%), Postives = 174/210 (82.86%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PD MPSD T+GV+ D+FNTFFSET AG+HVPRAVFVDLEP+V+DEVR+G YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVD+ LDR+RKL+D CTGLQGFL+F++ VDYGKKSKL F +YP+PQV+TAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE ++T Sbjct: 16 MGNAVWELYCLEHGIQPDAKMPSDKTVGVSDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEVRSGVYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYT 225 HSP 2 Score: 23.8682 bits (50), Expect = 1.194e-84 Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLI QI Sbjct: 224 YTNLNRLIGQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA2_DROME (Tubulin alpha-2 chain OS=Drosophila melanogaster GN=alphaTub85E PE=1 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 1.805e-84 Identity = 147/209 (70.33%), Postives = 173/209 (82.78%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANF 628 +GN+ ELYCLEHGI PDG MPSD T+G D+F+TFFSET AG+HVPRAVFVDLEPTV+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVD+ LDR+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE + Sbjct: 16 IGNACWELYCLEHGIQPDGHMPSDKTVGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY 224
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1) HSP 1 Score: 308.531 bits (789), Expect = 2.031e-84 Identity = 147/210 (70.00%), Postives = 169/210 (80.48%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+F TFF ET AG+HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+D LDR+RKLSD CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 2.031e-84 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1) HSP 1 Score: 308.531 bits (789), Expect = 2.031e-84 Identity = 147/210 (70.00%), Postives = 169/210 (80.48%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+F TFF ET AG+HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+D LDR+RKLSD CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 2.031e-84 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1) HSP 1 Score: 308.531 bits (789), Expect = 2.031e-84 Identity = 147/210 (70.00%), Postives = 169/210 (80.48%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+F TFF ET AG+HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+D LDR+RKLSD CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 2.031e-84 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1) HSP 1 Score: 308.531 bits (789), Expect = 2.031e-84 Identity = 147/210 (70.00%), Postives = 169/210 (80.48%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+F TFF ET AG+HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+D LDR+RKLSD CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 2.031e-84 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2) HSP 1 Score: 308.531 bits (789), Expect = 2.031e-84 Identity = 147/210 (70.00%), Postives = 169/210 (80.48%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD TIG D+F TFF ET AG+HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+D LDR+RKLSD CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIE +T Sbjct: 16 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 2.031e-84 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1) HSP 1 Score: 306.605 bits (784), Expect = 1.001e-83 Identity = 143/210 (68.10%), Postives = 171/210 (81.43%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI P G MPSD +G D+FNTFFSET +G+HVPRAVFVDLEPTV+DE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYT+GKE +DL LDRVRKLSD CTGLQGFL+F++ VDYGKKSKL F+IYP+PQV+TAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDIC+R+LDIE ++T Sbjct: 16 IGNACWELYCLEHGIQPSGQMPSDKAVGGKDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEIRTGLYRQLFHPEQLITGKEDAANNYARGHYTIGKEHIDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKRNLDIERPSYT 225 HSP 2 Score: 25.0238 bits (53), Expect = 1.001e-83 Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQ+ Sbjct: 224 YTNLNRLISQV 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1) HSP 1 Score: 307.76 bits (787), Expect = 1.001e-83 Identity = 141/210 (67.14%), Postives = 174/210 (82.86%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 +GN+ ELYCLEHGI PDG MPSD ++G D+F+TFFSET +GRHVPRAV +DLEPTVIDE+RTG+YR LFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+R+L+DNCTGLQGFLVF++ VDYGKK+KL F++YP+PQVSTAVVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIE ++T Sbjct: 16 IGNACWELYCLEHGIQPDGQMPSDKSLGGCDDSFSTFFSETGSGRHVPRAVMIDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLDRIRRLADNCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKAKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPSYT 225 HSP 2 Score: 23.8682 bits (50), Expect = 1.001e-83 Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLI QI Sbjct: 224 YTNLNRLIGQI 234 The following BLAST results are available for this feature:
BLAST of CN187751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 420
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187751 ID=CN187751; Name=CN187751; organism=Citrus sinensis; type=EST; length=670bpback to top |