CN187750

Overview
NameCN187750
Unique NameCN187750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5811 contig Csv1_Contig5811:86..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.510e-78
Identity = 136/144 (94.44%), Postives = 141/144 (97.92%), Query Frame = -1 
Query:  295 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 726
            SV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  287 SVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.510e-78
Identity = 136/144 (94.44%), Postives = 141/144 (97.92%), Query Frame = -1 
Query:  295 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 726
            SV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  287 SVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.510e-78
Identity = 136/144 (94.44%), Postives = 141/144 (97.92%), Query Frame = -1 
Query:  295 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 726
            SV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  287 SVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.111e-77
Identity = 135/144 (93.75%), Postives = 141/144 (97.92%), Query Frame = -1 
Query:  295 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 726
            SV EITN+ FEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  287 SVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.111e-77
Identity = 135/144 (93.75%), Postives = 141/144 (97.92%), Query Frame = -1 
Query:  295 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 726
            SV EITN+ FEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  287 SVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.111e-77
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = -1 
Query:  295 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 726
            SVPEITN+VFE SS+MAKCDPRHGKYMACCLMYRGDVVPKDVNAAV +IKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRID KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  287 SVPEITNSVFESSSVMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVHSIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBA1_VOLCA (Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.111e-77
Identity = 134/144 (93.06%), Postives = 140/144 (97.22%), Query Frame = -1 
Query:  295 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 726
            SV EITNA FEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+TA+ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  287 SVAEITNAAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.452e-77
Identity = 135/144 (93.75%), Postives = 140/144 (97.22%), Query Frame = -1 
Query:  295 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 726
            SVPEIT +VFEPS+MMAKCDPRHGKYMACCLMYRGDVVPKDVN AVA IK KRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  287 SVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.896e-77
Identity = 136/144 (94.44%), Postives = 140/144 (97.22%), Query Frame = -1 
Query:  295 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 726
            SV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  287 SVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPGVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBA2_HORVU (Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.896e-77
Identity = 136/144 (94.44%), Postives = 140/144 (97.22%), Query Frame = -1 
Query:  295 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 726
            SV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  287 SVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPGVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
The following BLAST results are available for this feature:
BLAST of CN187750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA2_MAIZE8.510e-7894.44Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]
TBA1_MAIZE8.510e-7894.44Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV... [more]
TBA1_ELEIN8.510e-7894.44Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 ... [more]
TBA_TOXGO1.111e-7793.75Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBA_NEOCA1.111e-7793.75Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBA2_ELEIN1.111e-7795.83Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA1_VOLCA1.111e-7793.06Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN... [more]
TBA1_ARATH1.452e-7793.75Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA_WHEAT1.896e-7794.44Tubulin alpha chain OS=Triticum aestivum GN=TUBA P... [more]
TBA2_HORVU1.896e-7794.44Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187750 ID=CN187750; Name=CN187750; organism=Citrus sinensis; type=EST; length=726bp
TTTTTCAAATATACTTCACTGATATTTTAAAAGCACCACGAATNAAATTC
AATAAAGGCCTTTGAGAGNNCAACAGCAAAAGGAAATACCCTTTAAAAAA
GAAACAAAGCAATAAAAAGGCAAGGGACTAAGCATTGAGTACAGACCCTC
ACATTTCTCAACAAATTTCCACATAAATGCCCTTGCAAAATGTACATATT
TCTCATCTTCATAGTTTACAGCAGAAGCAGTACATCAATATTCTTCACCA
TCATCCTCATCATCAACTCCTTCTGCACCAACTTCCTCATAATCTTTCTC
AAGAGCAGCCAGATCTTCACGTGCTTCTGAGAATTCACCTTCCTCCATGC
CTTCACCAACGTACCAGTGGACGAATGCCCTCTTGGCATACATGAGATCG
AATTTGTGATCAATGCGAGAGAACACTTCAGCCACTGCTGTGTTGTTGCT
GATCATGCAAACAGCTCGCTGAACCTTGGCCAGGTCACCTCCAGGTACAA
CAGTTGGAGGCTGATAGTTAATACCACATTTGAAGCCAGTTGGGCACCAG
TCAACAAATTGCACGGTCCTCTTAGTTTTGATAGTGGCAACAGCGGCATT
AACATCCTTGGGGACAACATCTCCTCGGTACATCAAGCAGCAAGCCATGT
ACTTCCCGTGCCTGGGGTCACATTTGGCCATCATGCTTGAGGGCTCAAAG
ACTGCATTTGTGATCTCTGGAACTGA
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