CN187750

Overview
NameCN187750
Unique NameCN187750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_GIALA (Tubulin beta chain OS=Giardia lamblia PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+ + +F+  +MMA  DPRHG+Y+    M+RG +  K+V+  +  I+ K +  FV+W P   K  +   PP          ++ A   I N+T + E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELVSQMFDNKNMMAASDPRHGRYLTAAAMFRGRMSTKEVDEQMLNIQNKNSSYFVEWIPNNMKVSVCDIPP--------RGLKMAATFIGNSTCIQELFKRVGEQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 49/139 (35.25%), Postives = 81/139 (58.27%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T   F+  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I N+TA+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  283 TVPELTQQQFDAKNMMCAADPRHGRYLTAACMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPP--------KGLKMSTTFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 413          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB8_PAPHA (Tubulin beta-8 chain OS=Papio hamadryas GN=TUBB8 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +V E+T  +F+  +MMA CDPRHG+Y+    ++RG +  ++V+  +  I+ K +  F DW P   K  +   PP          ++ +   I NNTA+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVAELTQQMFDARNMMAACDPRHGRYLTAAAIFRGRMPMREVDEQMFNIQNKNSSYFADWLPHNVKTAVCDIPPR--------GLKMSATFIGNNTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 50/139 (35.97%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SVPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 SVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_BRUPA (Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +V E+T  +F+  +MMA CDPRHG+Y+    M+RG +  ++V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I N TA+ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 NVAELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMREVDEQMMQVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 49/139 (35.25%), Postives = 84/139 (60.43%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SV E+T  +F+  +MM  CDP+ G+Y+    M+RG +  KDV+  ++ +++K +  FV+W P+  K  +    PT         ++ +   + N T++ E+F RI  +F +M+ ++AF+HWY GEGM+E EFSEA  ++
Sbjct:  285 SVSELTQQMFDSKNMMTACDPKKGRYLTVAAMFRGKISMKDVDEQMSMVQSKNSSLFVEWIPSNVKTAVCDIAPT--------GLEMSATFVGNTTSIQELFKRISDQFTVMFRRKAFLHWYTGEGMDEMEFSEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 48/139 (34.53%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +F+  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I N+TA+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 49/139 (35.25%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ AV  I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMAVTFIGNSTSIQEMFRRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +F+  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I N+TA+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMFDAKNMMCASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPP--------KGLKLASTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_BOMMO (Tubulin beta chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 49/142 (34.51%), Postives = 84/142 (59.15%), Query Frame = -1
Query:  301 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 726
            +VPE+T  +F+  +MMA CDP  G+Y+    ++RG +  K+++  +  ++ K    FV+W P   +  +   PP          ++ +   I N TA+ E+F RI  +F  M++++AF+HWY GEGMEEG+F+EA  +++ L
Sbjct:  285 TVPELTQQMFDAKNMMAACDPHRGRYLTVATVFRGRMSMKEIDEQILNVQKKNKDFFVEWIPNNVQTAVCDIPPR--------GMKMSATFIGNTTAIQEIFKRISEQFAAMFSRKAFLHWYTGEGMEEGDFAEADNNVSDL 418          
The following BLAST results are available for this feature:
BLAST of CN187750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB_GIALA4.148e-2435.97Tubulin beta chain OS=Giardia lamblia PE=2 SV=3[more]
TBB_ACHKL4.148e-2435.25Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1[more]
TBB8_PAPHA4.148e-2435.97Tubulin beta-8 chain OS=Papio hamadryas GN=TUBB8 P... [more]
TBB1_PEA4.148e-2435.97Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=... [more]
TBB1_BRUPA4.148e-2435.97Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1[more]
TBB_ENCIN5.418e-2435.25Tubulin beta chain OS=Encephalitozoon intestinalis... [more]
TBB1_CYAPA5.418e-2434.53Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUB... [more]
TBB1_ANEPH5.418e-2435.25Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]
TBB_EUPCR7.076e-2435.97Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]
TBB_BOMMO7.076e-2434.51Tubulin beta chain OS=Bombyx mori PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187750 ID=CN187750; Name=CN187750; organism=Citrus sinensis; type=EST; length=726bp
TTTTTCAAATATACTTCACTGATATTTTAAAAGCACCACGAATNAAATTC
AATAAAGGCCTTTGAGAGNNCAACAGCAAAAGGAAATACCCTTTAAAAAA
GAAACAAAGCAATAAAAAGGCAAGGGACTAAGCATTGAGTACAGACCCTC
ACATTTCTCAACAAATTTCCACATAAATGCCCTTGCAAAATGTACATATT
TCTCATCTTCATAGTTTACAGCAGAAGCAGTACATCAATATTCTTCACCA
TCATCCTCATCATCAACTCCTTCTGCACCAACTTCCTCATAATCTTTCTC
AAGAGCAGCCAGATCTTCACGTGCTTCTGAGAATTCACCTTCCTCCATGC
CTTCACCAACGTACCAGTGGACGAATGCCCTCTTGGCATACATGAGATCG
AATTTGTGATCAATGCGAGAGAACACTTCAGCCACTGCTGTGTTGTTGCT
GATCATGCAAACAGCTCGCTGAACCTTGGCCAGGTCACCTCCAGGTACAA
CAGTTGGAGGCTGATAGTTAATACCACATTTGAAGCCAGTTGGGCACCAG
TCAACAAATTGCACGGTCCTCTTAGTTTTGATAGTGGCAACAGCGGCATT
AACATCCTTGGGGACAACATCTCCTCGGTACATCAAGCAGCAAGCCATGT
ACTTCCCGTGCCTGGGGTCACATTTGGCCATCATGCTTGAGGGCTCAAAG
ACTGCATTTGTGATCTCTGGAACTGA
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