CN187750
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_GIALA (Tubulin beta chain OS=Giardia lamblia PE=2 SV=3) HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24 Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+ + +F+ +MMA DPRHG+Y+ M+RG + K+V+ + I+ K + FV+W P K + PP ++ A I N+T + E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 TVPELVSQMFDNKNMMAASDPRHGRYLTAAAMFRGRMSTKEVDEQMLNIQNKNSSYFVEWIPNNMKVSVCDIPP--------RGLKMAATFIGNSTCIQELFKRVGEQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24 Identity = 49/139 (35.25%), Postives = 81/139 (58.27%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+T F+ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ + I N+TA+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 283 TVPELTQQQFDAKNMMCAADPRHGRYLTAACMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPP--------KGLKMSTTFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 413
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB8_PAPHA (Tubulin beta-8 chain OS=Papio hamadryas GN=TUBB8 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24 Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +V E+T +F+ +MMA CDPRHG+Y+ ++RG + ++V+ + I+ K + F DW P K + PP ++ + I NNTA+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 TVAELTQQMFDARNMMAACDPRHGRYLTAAAIFRGRMPMREVDEQMFNIQNKNSSYFADWLPHNVKTAVCDIPPR--------GLKMSATFIGNNTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24 Identity = 50/139 (35.97%), Postives = 83/139 (59.71%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 SVPE+T +++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PPT ++ A I N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 SVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_BRUPA (Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24 Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +V E+T +F+ +MMA CDPRHG+Y+ M+RG + ++V+ + ++ K + FV+W P K + PP ++ + I N TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 NVAELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMREVDEQMMQVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24 Identity = 49/139 (35.25%), Postives = 84/139 (60.43%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 SV E+T +F+ +MM CDP+ G+Y+ M+RG + KDV+ ++ +++K + FV+W P+ K + PT ++ + + N T++ E+F RI +F +M+ ++AF+HWY GEGM+E EFSEA ++ Sbjct: 285 SVSELTQQMFDSKNMMTACDPKKGRYLTVAAMFRGKISMKDVDEQMSMVQSKNSSLFVEWIPSNVKTAVCDIAPT--------GLEMSATFVGNTTSIQELFKRISDQFTVMFRRKAFLHWYTGEGMDEMEFSEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24 Identity = 48/139 (34.53%), Postives = 82/139 (58.99%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+T +F+ +MM DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ + I N+TA+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 TVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24 Identity = 49/139 (35.25%), Postives = 83/139 (59.71%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+T +++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ AV I N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMAVTFIGNSTSIQEMFRRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24 Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+T +F+ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ A I N+TA+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 TVPELTQQMFDAKNMMCASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPP--------KGLKLASTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_BOMMO (Tubulin beta chain OS=Bombyx mori PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24 Identity = 49/142 (34.51%), Postives = 84/142 (59.15%), Query Frame = -1 Query: 301 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 726 +VPE+T +F+ +MMA CDP G+Y+ ++RG + K+++ + ++ K FV+W P + + PP ++ + I N TA+ E+F RI +F M++++AF+HWY GEGMEEG+F+EA +++ L Sbjct: 285 TVPELTQQMFDAKNMMAACDPHRGRYLTVATVFRGRMSMKEIDEQILNVQKKNKDFFVEWIPNNVQTAVCDIPPR--------GMKMSATFIGNTTAIQEIFKRISEQFAAMFSRKAFLHWYTGEGMEEGDFAEADNNVSDL 418 The following BLAST results are available for this feature:
BLAST of CN187750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 379
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187750 ID=CN187750; Name=CN187750; organism=Citrus sinensis; type=EST; length=726bpback to top |