CN187750

Overview
NameCN187750
Unique NameCN187750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_ACRCO (Tubulin beta chain OS=Acremonium coenophialum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 49/139 (35.25%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SVPE+T  +F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 SVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPP--------RDLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 48/139 (34.53%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         +  A   + N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GLSMASTFVGNSTSIQEMFRRVSEQFTSMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_USTVI (Tubulin beta chain OS=Ustilago violacea PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +V E+T  +F+  +MMA  DPRHG+Y+     +RG V  K+V   + +I+ K +  FV+W P      +      V P G    ++ +V  I NNT++ E+F R+   FD+M+ +RAF+HWY GEGM+E EFSEA  ++
Sbjct:  285 TVAELTAQMFDAKNMMAASDPRHGRYLTVAAYFRGKVSMKEVEDQMVSIQQKNSQYFVEWIPNN----VQSAHCEVAPRG----LKMSVTFIGNNTSIQELFKRVGDHFDVMFRRRAFLHWYTGEGMDEMEFSEASANM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_NEUCR (Tubulin beta chain OS=Neurospora crassa GN=tub-2 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 50/139 (35.97%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SVPE+T  +F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + N+TA+ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 SVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_METAN (Tubulin beta chain OS=Metarhizium anisopliae PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 49/139 (35.25%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SVPE+T  +F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 SVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPP--------RGLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_EPITY (Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 49/139 (35.25%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SVPE+T  +F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 SVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPP--------RGLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_CEPAC (Tubulin beta chain OS=Cephalosporium acremonium GN=TUB2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 49/139 (35.25%), Postives = 84/139 (60.43%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SVPE+T  +F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  +++K +  FV+W P   +  +   PP          ++ +   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 SVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQSKNSSYFVEWIPNNIQTALCAIPP--------RGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB3_CHICK (Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 48/139 (34.53%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VP++T  +F+  +MMA C+P HG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I N+TA+ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPDLTQQMFDAKNMMAACEPGHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_CICAR (Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 47/139 (33.81%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  287 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQIINVQNKNSSYFVEWIPNNVKSSVCDIPP--------KNLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 417          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_ASPPA (Tubulin beta chain OS=Aspergillus parasiticus GN=benR PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 50/139 (35.97%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SVPE+T  +F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  I++K    FV+W P   +  +   PP          ++ +   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 SVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNIQSKNQTYFVEWIPNNIQTALCSIPP--------RGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
The following BLAST results are available for this feature:
BLAST of CN187750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB_ACRCO1.207e-2335.25Tubulin beta chain OS=Acremonium coenophialum GN=T... [more]
TBB2_WHEAT1.207e-2334.53Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2... [more]
TBB_USTVI1.576e-2338.85Tubulin beta chain OS=Ustilago violacea PE=2 SV=1[more]
TBB_NEUCR1.576e-2335.97Tubulin beta chain OS=Neurospora crassa GN=tub-2 P... [more]
TBB_METAN1.576e-2335.25Tubulin beta chain OS=Metarhizium anisopliae PE=3 ... [more]
TBB_EPITY1.576e-2335.25Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=... [more]
TBB_CEPAC1.576e-2335.25Tubulin beta chain OS=Cephalosporium acremonium GN... [more]
TBB3_CHICK1.576e-2334.53Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1[more]
TBB_CICAR2.059e-2333.81Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2... [more]
TBB_ASPPA2.059e-2335.97Tubulin beta chain OS=Aspergillus parasiticus GN=b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187750 ID=CN187750; Name=CN187750; organism=Citrus sinensis; type=EST; length=726bp
TTTTTCAAATATACTTCACTGATATTTTAAAAGCACCACGAATNAAATTC
AATAAAGGCCTTTGAGAGNNCAACAGCAAAAGGAAATACCCTTTAAAAAA
GAAACAAAGCAATAAAAAGGCAAGGGACTAAGCATTGAGTACAGACCCTC
ACATTTCTCAACAAATTTCCACATAAATGCCCTTGCAAAATGTACATATT
TCTCATCTTCATAGTTTACAGCAGAAGCAGTACATCAATATTCTTCACCA
TCATCCTCATCATCAACTCCTTCTGCACCAACTTCCTCATAATCTTTCTC
AAGAGCAGCCAGATCTTCACGTGCTTCTGAGAATTCACCTTCCTCCATGC
CTTCACCAACGTACCAGTGGACGAATGCCCTCTTGGCATACATGAGATCG
AATTTGTGATCAATGCGAGAGAACACTTCAGCCACTGCTGTGTTGTTGCT
GATCATGCAAACAGCTCGCTGAACCTTGGCCAGGTCACCTCCAGGTACAA
CAGTTGGAGGCTGATAGTTAATACCACATTTGAAGCCAGTTGGGCACCAG
TCAACAAATTGCACGGTCCTCTTAGTTTTGATAGTGGCAACAGCGGCATT
AACATCCTTGGGGACAACATCTCCTCGGTACATCAAGCAGCAAGCCATGT
ACTTCCCGTGCCTGGGGTCACATTTGGCCATCATGCTTGAGGGCTCAAAG
ACTGCATTTGTGATCTCTGGAACTGA
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