CN187750

Overview
NameCN187750
Unique NameCN187750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_DAUCA (Tubulin beta-1 chain (Fragment) OS=Daucus carota GN=TUBB1 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SVPE+T  +++  +MM   DPRHG+Y+    M+R  +  KD++  +  ++ K +  FV+W P   K  +   PPT         ++ A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  153 SVPELTQQMWDSKNMMCAADPRHGRYLTASAMFREKMSTKDLDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 283          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_RHYSE (Tubulin beta chain OS=Rhynchosporium secalis PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 49/139 (35.25%), Postives = 84/139 (60.43%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W PT  +  +   PP          ++ +   + N+T++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPTNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRIGDQFTRMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 47/139 (33.81%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I N+TA+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_PESMI (Tubulin beta chain OS=Pestalotiopsis microspora GN=TUBB PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 49/139 (35.25%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + N+TA+ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_GIBFU (Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SVPE+T  +F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          +  +   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 SVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGRVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPP--------RGLTMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 47/139 (33.81%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I N+TA+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 47/139 (33.81%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I N+TA+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 48/139 (34.53%), Postives = 81/139 (58.27%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 48/139 (34.53%), Postives = 81/139 (58.27%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 48/139 (34.53%), Postives = 81/139 (58.27%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
The following BLAST results are available for this feature:
BLAST of CN187750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB1_DAUCA2.689e-2335.25Tubulin beta-1 chain (Fragment) OS=Daucus carota G... [more]
TBB_RHYSE3.512e-2335.25Tubulin beta chain OS=Rhynchosporium secalis PE=3 ... [more]
TBB_POLAG3.512e-2333.81Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ... [more]
TBB_PESMI3.512e-2335.25Tubulin beta chain OS=Pestalotiopsis microspora GN... [more]
TBB_GIBFU3.512e-2335.25Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2... [more]
TBB_CHLRE3.512e-2333.81Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB_CHLIN3.512e-2333.81Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB8_MAIZE3.512e-2334.53Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=... [more]
TBB6_MAIZE3.512e-2334.53Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=... [more]
TBB5_MAIZE3.512e-2334.53Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187750 ID=CN187750; Name=CN187750; organism=Citrus sinensis; type=EST; length=726bp
TTTTTCAAATATACTTCACTGATATTTTAAAAGCACCACGAATNAAATTC
AATAAAGGCCTTTGAGAGNNCAACAGCAAAAGGAAATACCCTTTAAAAAA
GAAACAAAGCAATAAAAAGGCAAGGGACTAAGCATTGAGTACAGACCCTC
ACATTTCTCAACAAATTTCCACATAAATGCCCTTGCAAAATGTACATATT
TCTCATCTTCATAGTTTACAGCAGAAGCAGTACATCAATATTCTTCACCA
TCATCCTCATCATCAACTCCTTCTGCACCAACTTCCTCATAATCTTTCTC
AAGAGCAGCCAGATCTTCACGTGCTTCTGAGAATTCACCTTCCTCCATGC
CTTCACCAACGTACCAGTGGACGAATGCCCTCTTGGCATACATGAGATCG
AATTTGTGATCAATGCGAGAGAACACTTCAGCCACTGCTGTGTTGTTGCT
GATCATGCAAACAGCTCGCTGAACCTTGGCCAGGTCACCTCCAGGTACAA
CAGTTGGAGGCTGATAGTTAATACCACATTTGAAGCCAGTTGGGCACCAG
TCAACAAATTGCACGGTCCTCTTAGTTTTGATAGTGGCAACAGCGGCATT
AACATCCTTGGGGACAACATCTCCTCGGTACATCAAGCAGCAAGCCATGT
ACTTCCCGTGCCTGGGGTCACATTTGGCCATCATGCTTGAGGGCTCAAAG
ACTGCATTTGTGATCTCTGGAACTGA
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