CN187750

Overview
NameCN187750
Unique NameCN187750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 48/139 (34.53%), Postives = 81/139 (58.27%), Query Frame = -1 
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 48/139 (34.53%), Postives = 81/139 (58.27%), Query Frame = -1 
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 48/139 (34.53%), Postives = 81/139 (58.27%), Query Frame = -1 
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 48/139 (34.53%), Postives = 81/139 (58.27%), Query Frame = -1 
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 47/139 (33.81%), Postives = 82/139 (58.99%), Query Frame = -1 
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I N+TA+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 46/139 (33.09%), Postives = 83/139 (59.71%), Query Frame = -1 
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            ++PE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         +  +   + N+T++ E+F R+  +F +M+ ++AF+HWY GEGM+E EF+E R ++
Sbjct:  285 TIPELTQQMWDARNMMCAADPRHGRYLTASAMFRGKMSTKEVDQQMINVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEVRANM 415
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 48/139 (34.53%), Postives = 81/139 (58.27%), Query Frame = -1 
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_EMENI (Tubulin beta-1 chain OS=Emericella nidulans GN=benA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 50/139 (35.97%), Postives = 83/139 (59.71%), Query Frame = -1 
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SVPE+T  +F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  I++K    FV+W P   +  +   PP          ++ +   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 SVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNIQSKNQSYFVEWIPNNIQTALCSIPP--------RGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.586e-23
Identity = 46/139 (33.09%), Postives = 83/139 (59.71%), Query Frame = -1 
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            ++PE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         +  +   + N+T++ E+F R+  +F +M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TIPELTQQMWDARNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GLTMSSTFMGNSTSIQEMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
[Close]
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.586e-23
Identity = 47/139 (33.81%), Postives = 81/139 (58.27%), Query Frame = -1 
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
The following BLAST results are available for this feature:
BLAST of CN187750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB4_ORYSJ3.512e-2334.53Tubulin beta-4 chain OS=Oryza sativa subsp. japoni... [more]
TBB4_ELEIN3.512e-2334.53Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 P... [more]
TBB2_ELEIN3.512e-2334.53Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 P... [more]
TBB1_WHEAT3.512e-2334.53Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1... [more]
TBB1_VOLCA3.512e-2333.81Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]
TBB1_SOYBN3.512e-2333.09Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]
TBB1_ORYSJ3.512e-2334.53Tubulin beta-1 chain OS=Oryza sativa subsp. japoni... [more]
TBB1_EMENI3.512e-2335.97Tubulin beta-1 chain OS=Emericella nidulans GN=ben... [more]
TBB7_GOSHI4.586e-2333.09Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB6_ORYSJ4.586e-2333.81Tubulin beta-6 chain OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187750 ID=CN187750; Name=CN187750; organism=Citrus sinensis; type=EST; length=726bp
TTTTTCAAATATACTTCACTGATATTTTAAAAGCACCACGAATNAAATTC
AATAAAGGCCTTTGAGAGNNCAACAGCAAAAGGAAATACCCTTTAAAAAA
GAAACAAAGCAATAAAAAGGCAAGGGACTAAGCATTGAGTACAGACCCTC
ACATTTCTCAACAAATTTCCACATAAATGCCCTTGCAAAATGTACATATT
TCTCATCTTCATAGTTTACAGCAGAAGCAGTACATCAATATTCTTCACCA
TCATCCTCATCATCAACTCCTTCTGCACCAACTTCCTCATAATCTTTCTC
AAGAGCAGCCAGATCTTCACGTGCTTCTGAGAATTCACCTTCCTCCATGC
CTTCACCAACGTACCAGTGGACGAATGCCCTCTTGGCATACATGAGATCG
AATTTGTGATCAATGCGAGAGAACACTTCAGCCACTGCTGTGTTGTTGCT
GATCATGCAAACAGCTCGCTGAACCTTGGCCAGGTCACCTCCAGGTACAA
CAGTTGGAGGCTGATAGTTAATACCACATTTGAAGCCAGTTGGGCACCAG
TCAACAAATTGCACGGTCCTCTTAGTTTTGATAGTGGCAACAGCGGCATT
AACATCCTTGGGGACAACATCTCCTCGGTACATCAAGCAGCAAGCCATGT
ACTTCCCGTGCCTGGGGTCACATTTGGCCATCATGCTTGAGGGCTCAAAG
ACTGCATTTGTGATCTCTGGAACTGA
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