CN187750
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_ERYGR (Tubulin beta chain OS=Erysiphe graminis subsp. hordei GN=TUB2 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.276e-22 Identity = 47/139 (33.81%), Postives = 82/139 (58.99%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+T +F+P +MMA D R+G+Y+ C ++RG V K+V + ++ K FV+W P + + PP ++ + + N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 TVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQQKNVSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_COCHE (Tubulin beta chain OS=Cochliobolus heterostrophus GN=TUB1 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.276e-22 Identity = 47/139 (33.81%), Postives = 82/139 (58.99%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+T +F+P +MMA D R+G+Y+ C +RG V K+V + ++ K + FV+W P + + PP ++ + + N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 TVPELTQQMFDPKNMMAASDFRNGRYLTCSAYFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.276e-22 Identity = 46/139 (33.09%), Postives = 80/139 (57.55%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+T +++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP + A + N+T++ E+F R+ +F M+ ++AF+HWY EGM+E EF+EA ++ Sbjct: 285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB2_ANEPH (Tubulin beta-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBB2 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.276e-22 Identity = 48/139 (34.53%), Postives = 80/139 (57.55%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+T + + +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ A I N+T++ E+F R+ +F M+ +AF+HWY GEGM+E EF+EA ++ Sbjct: 253 TVPELTQQMRDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMACTFIGNSTSIQEMFRRVRDQFTAMFRXKAFLHWYTGEGMDEMEFTEAESNM 383
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_BOTFU (Tubulin beta chain OS=Botryotinia fuckeliana GN=tubA PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22 Identity = 46/139 (33.09%), Postives = 83/139 (59.71%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+T +++P +MMA D R+G+Y+ C ++RG V K+V + ++ K + FV+W P + + PP ++ + + N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 TVPELTQQMYDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22 Identity = 50/139 (35.97%), Postives = 79/139 (56.83%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 ++ E+T +F+ +MMA CDP HG+Y+ MYRG V K+V + +T+ + FV+W P K + PP + A I N TA+ E+F+R+ +F M+ +RAF+H++ EGM+E EFSEA ++ Sbjct: 285 TILELTRQMFDAKNMMAACDPSHGRYLTVAAMYRGRVSMKEVEDRILETQTRNSTYFVEWIPNNVKTAVCDIPP--------IDFKVAGTFIGNTTAIQELFTRVSDQFSAMFRRRAFLHFFTSEGMDEMEFSEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22 Identity = 45/139 (32.37%), Postives = 80/139 (57.55%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+T +++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP + + + N+T++ E+F R+ +F M+ ++AF+HWY EGM+E EF+EA ++ Sbjct: 285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_YEAST (Tubulin beta chain OS=Saccharomyces cerevisiae GN=TUB2 PE=1 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22 Identity = 49/139 (35.25%), Postives = 83/139 (59.71%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+T +F+ +MMA DPR+G+Y+ +RG V K+V + +++K + FV+W P + + +V P G + A I+N+T++ E+F R+ +F M+ ++AF+HWY EGM+E EFSEA ++ Sbjct: 285 TVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVC----SVAPQG----LDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB8B_HUMAN (Tubulin beta-8 chain B OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22 Identity = 48/139 (34.53%), Postives = 80/139 (57.55%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +V E+T +F+ +MMA CDPRHG Y+ ++RG + ++V+ + I+ K + F DW P K + PP ++ + I NN A+ E+F+ + +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 TVAELTQQMFDAKNMMAACDPRHGCYLTVAAIFRGRMPMREVDEQMFNIQDKNSSYFADWFPDNVKTAVCDIPP--------RGLKMSATFIGNNAAIQELFTCVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_ASPFU (Tubulin beta chain OS=Aspergillus fumigatus GN=AFUA_7G00250 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22 Identity = 46/139 (33.09%), Postives = 84/139 (60.43%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 SVPE+T +F+ +MM C+ ++G+++ C ++RG + K+V+ + +I TK + FV+W P + + PP ++ + + N+T+V E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 SVPELTQQMFDSRNMMTACNFQNGRFLTCSALFRGKISMKEVDDQMLSIHTKNSGYFVEWIPNNVQTALCSVPP--------KGLKMSATFVGNSTSVQELFQRVATQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415 The following BLAST results are available for this feature:
BLAST of CN187750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 379
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187750 ID=CN187750; Name=CN187750; organism=Citrus sinensis; type=EST; length=726bpback to top |