CN187750

Overview
NameCN187750
Unique NameCN187750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_HUMAN (Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 48/139 (34.53%), Postives = 78/139 (56.12%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SV E+T  +F+  + MA CD R G+Y+    ++RG +  K+V+  + +++T+ +  FV+W P   K  +   PP          +  A   I NNTA+ E+F+R+   F  M+ ++AFVHWY  EGM+  EF EA  ++
Sbjct:  285 SVAELTQQMFDARNTMAACDLRRGRYLTVACIFRGKMSTKEVDQQLLSVQTRNSSCFVEWIPNNVKVAVCDIPPR--------GLSMAATFIGNNTAIQEIFNRVSEHFSAMFKRKAFVHWYTSEGMDINEFGEAENNI 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = -1
Query:  331 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF
Sbjct:  285 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_UROFA (Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.130e-21
Identity = 49/142 (34.51%), Postives = 83/142 (58.45%), Query Frame = -1
Query:  301 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 726
            +VPE+T+ +F+  +MMA  DPRHG+Y+     +RG V  K+V   + +++ K +  FV+W P      +      + P       + +V  I N+TA+ ++F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L
Sbjct:  285 TVPELTSQMFDAKNMMAASDPRHGRYLTVAAYFRGKVSMKEVEENMLSVQNKNSNYFVEWIPNN----VQTAHCDIAPRAH----KMSVTFIGNSTAIQDLFKRVADQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMQDL 418          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB2_EMENI (Tubulin beta-2 chain OS=Emericella nidulans GN=tubC PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.475e-21
Identity = 45/139 (32.37%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            SVPE+T  +F+  +MM   + ++G+++ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ A   + N+T+V E+F+R+ ++F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 SVPELTQQMFDSRNMMTAANYQNGRFLTCSTLFRGKVAMKEVEDQMRNMQNKYSSYFVEWIPNNVQTALCSMPPK--------GLKMAATFVGNSTSVQELFNRVSNQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_CHOCR (Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.475e-21
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = -1
Query:  301 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 726
            SVPE+   +F+ ++MMA+ DPR G+Y+   + +RG V  K+V   +  ++TK +  FV+W P   K  +   P         A  + +   I N TA+   F R  ++F  M+ ++AF+HWY  EGM+E EFSEA  +LA L
Sbjct:  287 SVPELAGQMFDRNNMMAEIDPREGRYLTAAVYFRGKVSTKEVEDEMTLMQTKNSAYFVEWIPHNIKTSVCDIP--------AAGEKISSAFIGNTTAIEATFKRFGNQFRSMFRRKAFLHWYKSEGMDELEFSEAESNLADL 420          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_VENIN (Tubulin beta chain OS=Venturia inaequalis PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 46/139 (33.09%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +F+P +MMA  D R+G+Y+    ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVPELTQQMFDPKNMMAASDFRNGRYLTSSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_COLGR (Tubulin beta-1 chain OS=Colletotrichum graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.287e-21
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = -1
Query:  310 VPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 723
            + E+T  +F+P ++M   D R G+++ C  M+RG V  K V   +  IK K +  FV+W P   +      PP    G D++        I N+TA+   F R+  +F LM+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  284 IAELTQQMFDPKNVMLASDFRDGRFLTCSTMFRGKVSMKQVEEQIQAIKNKNSANFVEWIPNNIQTAHCSVPPK---GLDVSST-----FIGNSTAIQNSFRRVGDQFSLMFRRKAFLHWYTGEGMDEMEFTEAESNM 413          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_GEOCN (Tubulin beta-1 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.607e-21
Identity = 45/139 (32.37%), Postives = 80/139 (57.55%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +F+  +MMA  DP+ G+Y+     +RG V  K+V   + +++ + +  FV+W P   +  I   PP          V+ +   I+N+T++ E+F R+  +F  M+ ++AF+HWY  EGM+  EF+EA  ++
Sbjct:  285 TVPELTQQLFDSKNMMAASDPKRGRYLTVAAFFRGKVSIKEVEDQMRSVQERNSAYFVEWIPNNVQTAICSVPP--------KDVKMSATFIANSTSIQELFKRVGDQFSAMFRRKAFLHWYTNEGMDITEFAEAESNM 415          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.322e-21
Identity = 45/139 (32.37%), Postives = 80/139 (57.55%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++P +MM   D R+G+Y+    ++RG V  K+V   +  ++ K    FV+W P   +  +   PP          ++ +   + N+TA+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  286 TVPELTQKMYDPKNMMCLLDFRNGRYLTASAIFRGKVSMKEVEDQMRNVQNKNHTYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVENSTAIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 416          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB1_COLGL (Tubulin beta-1 chain OS=Colletotrichum gloeosporioides GN=TUB1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.322e-21
Identity = 44/138 (31.88%), Postives = 79/138 (57.25%), Query Frame = -1
Query:  310 VPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 723
            V E+T  +F+P ++M+  D R+G+++ C  +YRG V  K +   +  ++ K +  FV+W P   +      PP          +  +   I N+TA+ ++F R+  +F +M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  287 VAELTQQMFDPKNVMSASDFRNGRFLTCSAIYRGKVSTKQIEEQIRGVQAKNSAYFVEWIPNNVQTAHCSIPPV--------GMNASSTFIGNSTAIQDIFRRVGDQFSVMFRRKAFLHWYTGEGMDEMEFTEAESNM 416          
The following BLAST results are available for this feature:
BLAST of CN187750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB1_HUMAN6.623e-2234.53Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1... [more]
TBB3_SOYBN8.650e-2234.85Tubulin beta chain (Fragment) OS=Glycine max GN=TU... [more]
TBB_UROFA1.130e-2134.51Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 ... [more]
TBB2_EMENI1.475e-2132.37Tubulin beta-2 chain OS=Emericella nidulans GN=tub... [more]
TBB1_CHOCR1.475e-2136.62Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB P... [more]
TBB_VENIN1.927e-2133.09Tubulin beta chain OS=Venturia inaequalis PE=3 SV=... [more]
TBB1_COLGR3.287e-2135.51Tubulin beta-1 chain OS=Colletotrichum graminicola... [more]
TBB1_GEOCN5.607e-2132.37Tubulin beta-1 chain OS=Geotrichum candidum PE=3 S... [more]
TBB_AJECA7.322e-2132.37Tubulin beta chain OS=Ajellomyces capsulata GN=TUB... [more]
TBB1_COLGL7.322e-2131.88Tubulin beta-1 chain OS=Colletotrichum gloeosporio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187750 ID=CN187750; Name=CN187750; organism=Citrus sinensis; type=EST; length=726bp
TTTTTCAAATATACTTCACTGATATTTTAAAAGCACCACGAATNAAATTC
AATAAAGGCCTTTGAGAGNNCAACAGCAAAAGGAAATACCCTTTAAAAAA
GAAACAAAGCAATAAAAAGGCAAGGGACTAAGCATTGAGTACAGACCCTC
ACATTTCTCAACAAATTTCCACATAAATGCCCTTGCAAAATGTACATATT
TCTCATCTTCATAGTTTACAGCAGAAGCAGTACATCAATATTCTTCACCA
TCATCCTCATCATCAACTCCTTCTGCACCAACTTCCTCATAATCTTTCTC
AAGAGCAGCCAGATCTTCACGTGCTTCTGAGAATTCACCTTCCTCCATGC
CTTCACCAACGTACCAGTGGACGAATGCCCTCTTGGCATACATGAGATCG
AATTTGTGATCAATGCGAGAGAACACTTCAGCCACTGCTGTGTTGTTGCT
GATCATGCAAACAGCTCGCTGAACCTTGGCCAGGTCACCTCCAGGTACAA
CAGTTGGAGGCTGATAGTTAATACCACATTTGAAGCCAGTTGGGCACCAG
TCAACAAATTGCACGGTCCTCTTAGTTTTGATAGTGGCAACAGCGGCATT
AACATCCTTGGGGACAACATCTCCTCGGTACATCAAGCAGCAAGCCATGT
ACTTCCCGTGCCTGGGGTCACATTTGGCCATCATGCTTGAGGGCTCAAAG
ACTGCATTTGTGATCTCTGGAACTGA
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