CN187750

Overview
NameCN187750
Unique NameCN187750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5811 contig Csv1_Contig5811:86..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 46/139 (33.09%), Postives = 79/139 (56.83%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +V E+T  +F+  +M A  DPRHG+Y+    +++G +  ++V+  +  I+ K +  F DW P   K  I   PP          ++ +   I NN A+ E+F+ +  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  213 TVAELTQQMFDAKNMRAARDPRHGRYLTAAAIFQGRMPMREVDEQMFNIQDKNSSYFADWFPDNVKTAICDIPPR--------GLKMSASFIGNNAAIQELFTCVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 343          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.381e-19
Identity = 48/139 (34.53%), Postives = 78/139 (56.12%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +V E+T  +F+  +MMA  DPRHG Y+    ++RG +  ++V+  +  I+ K +  F DW P   K  +   PP          ++ +V    NNTAV E+  R+  +F   + ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  285 TVAELTQQMFDAKNMMAARDPRHGCYLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLPNNIKTAVCDIPPW--------GLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEGMDEMEFTEAESNM 414          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.381e-19
Identity = 44/139 (31.65%), Postives = 77/139 (55.40%), Query Frame = -1
Query:  310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726
            +VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I N++++ E+F R       M+ ++AF+HWY  EGM+E EF+E   ++
Sbjct:   81 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMACTFIGNSSSIQEMFRRDATSLTAMFRRKAFLHWYTWEGMDEMEFTEEESNM 211          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.169e-18
Identity = 45/138 (32.61%), Postives = 77/138 (55.80%), Query Frame = -1
Query:  313 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 726
            SV E+T+++F+  +++   DPR G+Y+    ++RG V   +   +V  ++ K +  FV+W P      +   PP   P        +A   ++N+T + E+F R   +F LM+ +RAF+HWY GEGM+  EF+EA  +
Sbjct:  289 SVSELTSSLFDKKNLLVASDPRFGRYLTAACIFRGKVSSHEAENSVMQLQRKNSNLFVEWIPDNVSVSLCSVPPVGQP--------QAAVALANSTCMQELFKRNLDQFALMFKRRAFLHWYTGEGMDVMEFTEAESN 418          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 43/142 (30.28%), Postives = 74/142 (52.11%), Query Frame = -1
Query:  301 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 726
            +V E+   +F  ++++   D R GK +    ++RG + P++V+  +  ++ K    FVDW P   K  I   PP          ++ +   I N TA+  +F R+      M  ++A +HWY GEGMEE EF +A+++L A+
Sbjct:  284 TVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPPR--------GLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEGMEEQEFQDAQQELQAI 417          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = -1
Query:  301 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAAL 699
            F     + + DP+H  Y+AC LM RG+V   D+   +  +K   ++QFV W   G+K  +   PP             ++  ++NNT V   F  +  +F  +Y K+A +H Y+  EGMEE  F+EA   L+AL
Sbjct:  327 FSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--SLQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSAL 450          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = -1
Query:  301 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAAL 699
            F     + + DPRH  Y+AC L+ RG+V   D+   +  +K    +QFV W   G+K  +   PP             ++  ++NNT V   F  +  +F  +Y K+A +H Y+  +GMEE  F+EA   L+AL
Sbjct:  327 FSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSAL 450          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 40/149 (26.85%), Postives = 78/149 (52.35%), Query Frame = -1
Query:  301 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV--CMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWY-----VGEGMEEGEFSEAREDLAAL 726
            SV ++   + +P ++M  C  + G Y++   + RGDV P D++ ++  I+ K+ V F+ W P   +  ++ Q P        A V   V  CM++N++ +  +F+RI   +D++  + AF++ Y       E ++  EF +A+E +  L
Sbjct:  288 SVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGPASIQVALSKQSP-------YANVPYRVSGCMMANHSNLGNLFARIIRTYDILRKRNAFLNVYKETPVFSENLD--EFEDAKETITNL 427          
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_LYMST (Tubulin beta chain (Fragment) OS=Lymnaea stagnalis PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = -1
Query:  310 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 558
            FV+W P   K  +   PP          ++ +   I N+TA+ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:    3 FVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 77          
The following BLAST results are available for this feature:
BLAST of CN187750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
YI016_HUMAN2.783e-2033.09Putative tubulin beta chain-like protein ENSP00000... [more]
TBB4Q_HUMAN1.381e-1934.53Putative tubulin beta-4q chain OS=Homo sapiens GN=... [more]
TBB3_ANEPH1.381e-1931.65Tubulin beta-3 chain (Fragment) OS=Anemia phylliti... [more]
TBB2_SUIBO1.169e-1832.61Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBBP_DROME3.184e-1630.28Probable tubulin beta chain CG32396 OS=Drosophila ... [more]
TBE_HUMAN3.295e-1332.84Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBE_MOUSE5.620e-1332.09Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_RETFI1.808e-1126.85Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBB_LYMST5.260e-1137.35Tubulin beta chain (Fragment) OS=Lymnaea stagnalis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187750 ID=CN187750; Name=CN187750; organism=Citrus sinensis; type=EST; length=726bp
TTTTTCAAATATACTTCACTGATATTTTAAAAGCACCACGAATNAAATTC
AATAAAGGCCTTTGAGAGNNCAACAGCAAAAGGAAATACCCTTTAAAAAA
GAAACAAAGCAATAAAAAGGCAAGGGACTAAGCATTGAGTACAGACCCTC
ACATTTCTCAACAAATTTCCACATAAATGCCCTTGCAAAATGTACATATT
TCTCATCTTCATAGTTTACAGCAGAAGCAGTACATCAATATTCTTCACCA
TCATCCTCATCATCAACTCCTTCTGCACCAACTTCCTCATAATCTTTCTC
AAGAGCAGCCAGATCTTCACGTGCTTCTGAGAATTCACCTTCCTCCATGC
CTTCACCAACGTACCAGTGGACGAATGCCCTCTTGGCATACATGAGATCG
AATTTGTGATCAATGCGAGAGAACACTTCAGCCACTGCTGTGTTGTTGCT
GATCATGCAAACAGCTCGCTGAACCTTGGCCAGGTCACCTCCAGGTACAA
CAGTTGGAGGCTGATAGTTAATACCACATTTGAAGCCAGTTGGGCACCAG
TCAACAAATTGCACGGTCCTCTTAGTTTTGATAGTGGCAACAGCGGCATT
AACATCCTTGGGGACAACATCTCCTCGGTACATCAAGCAGCAAGCCATGT
ACTTCCCGTGCCTGGGGTCACATTTGGCCATCATGCTTGAGGGCTCAAAG
ACTGCATTTGTGATCTCTGGAACTGA
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