CN187750
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20 Identity = 46/139 (33.09%), Postives = 79/139 (56.83%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +V E+T +F+ +M A DPRHG+Y+ +++G + ++V+ + I+ K + F DW P K I PP ++ + I NN A+ E+F+ + +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 213 TVAELTQQMFDAKNMRAARDPRHGRYLTAAAIFQGRMPMREVDEQMFNIQDKNSSYFADWFPDNVKTAICDIPPR--------GLKMSASFIGNNAAIQELFTCVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 343
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.381e-19 Identity = 48/139 (34.53%), Postives = 78/139 (56.12%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +V E+T +F+ +MMA DPRHG Y+ ++RG + ++V+ + I+ K + F DW P K + PP ++ +V NNTAV E+ R+ +F + ++AF+HWY GEGM+E EF+EA ++ Sbjct: 285 TVAELTQQMFDAKNMMAARDPRHGCYLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLPNNIKTAVCDIPPW--------GLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEGMDEMEFTEAESNM 414
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.381e-19 Identity = 44/139 (31.65%), Postives = 77/139 (55.40%), Query Frame = -1 Query: 310 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 726 +VPE+T +++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ A I N++++ E+F R M+ ++AF+HWY EGM+E EF+E ++ Sbjct: 81 TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMACTFIGNSSSIQEMFRRDATSLTAMFRRKAFLHWYTWEGMDEMEFTEEESNM 211
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.169e-18 Identity = 45/138 (32.61%), Postives = 77/138 (55.80%), Query Frame = -1 Query: 313 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 726 SV E+T+++F+ +++ DPR G+Y+ ++RG V + +V ++ K + FV+W P + PP P +A ++N+T + E+F R +F LM+ +RAF+HWY GEGM+ EF+EA + Sbjct: 289 SVSELTSSLFDKKNLLVASDPRFGRYLTAACIFRGKVSSHEAENSVMQLQRKNSNLFVEWIPDNVSVSLCSVPPVGQP--------QAAVALANSTCMQELFKRNLDQFALMFKRRAFLHWYTGEGMDVMEFTEAESN 418
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16 Identity = 43/142 (30.28%), Postives = 74/142 (52.11%), Query Frame = -1 Query: 301 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 726 +V E+ +F ++++ D R GK + ++RG + P++V+ + ++ K FVDW P K I PP ++ + I N TA+ +F R+ M ++A +HWY GEGMEE EF +A+++L A+ Sbjct: 284 TVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPPR--------GLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEGMEEQEFQDAQQELQAI 417
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13 Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = -1 Query: 301 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAAL 699 F + + DP+H Y+AC LM RG+V D+ + +K ++QFV W G+K + PP ++ ++NNT V F + +F +Y K+A +H Y+ EGMEE F+EA L+AL Sbjct: 327 FSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--SLQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSAL 450
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13 Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = -1 Query: 301 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAAL 699 F + + DPRH Y+AC L+ RG+V D+ + +K +QFV W G+K + PP ++ ++NNT V F + +F +Y K+A +H Y+ +GMEE F+EA L+AL Sbjct: 327 FSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSAL 450
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11 Identity = 40/149 (26.85%), Postives = 78/149 (52.35%), Query Frame = -1 Query: 301 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV--CMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWY-----VGEGMEEGEFSEAREDLAAL 726 SV ++ + +P ++M C + G Y++ + RGDV P D++ ++ I+ K+ V F+ W P + ++ Q P A V V CM++N++ + +F+RI +D++ + AF++ Y E ++ EF +A+E + L Sbjct: 288 SVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGPASIQVALSKQSP-------YANVPYRVSGCMMANHSNLGNLFARIIRTYDILRKRNAFLNVYKETPVFSENLD--EFEDAKETITNL 427
BLAST of CN187750 vs. ExPASy Swiss-Prot
Match: TBB_LYMST (Tubulin beta chain (Fragment) OS=Lymnaea stagnalis PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11 Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = -1 Query: 310 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 558 FV+W P K + PP ++ + I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 3 FVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 77 The following BLAST results are available for this feature:
BLAST of CN187750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 379
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187750 ID=CN187750; Name=CN187750; organism=Citrus sinensis; type=EST; length=726bpback to top |