CN187743

Overview
NameCN187743
Unique NameCN187743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3096 contig Csv1_Contig3096:1002..1613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187743 vs. ExPASy Swiss-Prot
Match: ALDCA_DANRE (Fructose-bisphosphate aldolase C-A OS=Danio rerio GN=aldoca PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.382e-21
Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = -1
Query:  277 AKYTLTMLRRRVPPAVPGIMFLFGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGTYSAEGESEEAK-KGMFVKGYTY 612
            A  T+T LRR VPPAV G+ FL GGQSE EA++NL+A+N      PW ++FS+ RALQ + LKTW+G+ EN  AA +  + RA+ NSLA  G Y+  G+S  A     ++  Y Y
Sbjct:  250 AMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLSAINNCRLVKPWALTFSFGRALQASALKTWRGQRENEAAATEEFIKRAEINSLASQGKYTVCGDSSGATGLSHYLSSYAY 364          
BLAST of CN187743 vs. ExPASy Swiss-Prot
Match: ALDOB_RAT (Fructose-bisphosphate aldolase B OS=Rattus norvegicus GN=Aldob PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-20
Identity = 55/115 (47.83%), Postives = 68/115 (59.13%), Query Frame = -1
Query:  277 AKYTLTMLRRRVPPAVPGIMFLFGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGTYSAEGESEEAK-KGMFVKGYTY 612
            A  T+T L R VP AVP I FL GG SE +ATLNLNA+ + P   PW +SFSY RALQ + L  W G+  N +A Q++ + RA AN  A  G Y   G S  A  + +F   YTY
Sbjct:  250 AMATVTALHRTVPAAVPSICFLSGGMSEEDATLNLNAIYRCPLPRPWKLSFSYGRALQASALAAWGGKAANKKATQEAFMKRAVANCQAAQGQYVHTGSSGAASTQSLFTASYTY 364          
BLAST of CN187743 vs. ExPASy Swiss-Prot
Match: ALF_LYMST (Fructose-bisphosphate aldolase (Fragment) OS=Lymnaea stagnalis PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.496e-15
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = -1
Query:  409 AKYTLTMLRRRVPPAVPGIMFLFGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPE 612
            A+ T+T L R VP AV GI FL GGQSE +AT+NLNA+NQ P   PW ++FSY RALQ +VLK W G+ E
Sbjct:   31 ARATVTALNRTVPAAVAGITFLSGGQSEEDATINLNAINQFPGRKPWPLTFSYGRALQASVLKAWGGKDE 100          
BLAST of CN187743 vs. ExPASy Swiss-Prot
Match: ALF1_XYLFA (Probable fructose-bisphosphate aldolase class 1 OS=Xylella fastidiosa GN=XF_0826 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = -1
Query:  337 AKYTLTMLRRRVPPAVPGIMFLFGGQSEVEATLNLNAMNQA-PNPWHVSFSYARALQNTVLKTW-QGRPENTEAAQKSLLVRAKANSLAQLGTY 612
            A+ T+  L+  VP  +PGI+FL GGQ++ ++T +LNAMNQ  P PW +SFSY RA+Q   LK W Q    N   AQ+ +  RAK N LA LG +
Sbjct:  239 AESTVMCLKSTVPAILPGIVFLSGGQTDAQSTAHLNAMNQLDPLPWPLSFSYGRAMQQAALKLWSQDMKGNFAKAQQVVYERAKENGLAALGKW 332          
BLAST of CN187743 vs. ExPASy Swiss-Prot
Match: ALF1_XYLFT (Probable fructose-bisphosphate aldolase class 1 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=PD_1845 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = -1
Query:  337 AKYTLTMLRRRVPPAVPGIMFLFGGQSEVEATLNLNAMNQ-APNPWHVSFSYARALQNTVLKTW-QGRPENTEAAQKSLLVRAKANSLAQLGTY 612
            A+ T+  L+  VP  +PGI+FL GGQ++ ++T +LNAMNQ  P PW +SFSY RA+Q   LK W Q    N   AQ+ +  RAK N LA LG +
Sbjct:  239 AESTVMCLKSTVPAILPGIVFLSGGQTDAQSTAHLNAMNQFDPLPWPLSFSYGRAMQQAALKLWSQDMKGNFAKAQQVVYERAKENGLAALGKW 332          
BLAST of CN187743 vs. ExPASy Swiss-Prot
Match: ALF1_XANCP (Probable fructose-bisphosphate aldolase class 1 OS=Xanthomonas campestris pv. campestris GN=XCC3185 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = -1
Query:  337 AKYTLTMLRRRVPPAVPGIMFLFGGQSEVEATLNLNAMNQAPN-PWHVSFSYARALQNTVLKTW-QGRPENTEAAQKSLLVRAKANSLAQLGTY 612
            A+ T+  L+  VP  +PGI+FL GGQ++ ++T +LN M+Q  N PW +SFSY RA+Q   LK W +    N   AQ+ +  RAK N LA LG +
Sbjct:  239 AESTVMCLKSTVPAILPGIVFLSGGQTDEQSTAHLNEMHQLGNLPWPLSFSYGRAMQQAALKLWSKDMTGNYAKAQQIIYERAKENGLAALGKW 332          
BLAST of CN187743 vs. ExPASy Swiss-Prot
Match: ALF1_XANAC (Probable fructose-bisphosphate aldolase class 1 OS=Xanthomonas axonopodis pv. citri GN=XAC3344 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = -1
Query:  337 AKYTLTMLRRRVPPAVPGIMFLFGGQSEVEATLNLNAMNQAPN-PWHVSFSYARALQNTVLKTW-QGRPENTEAAQKSLLVRAKANSLAQLGTY 612
            A+ T+  L+  VP  +PGI+FL GGQ++ ++T +LN M+Q  N PW +SFSY RA+Q   LK W +    N   AQ+ +  RAK N LA LG +
Sbjct:  239 AESTVMCLKSTVPAILPGIVFLSGGQTDEQSTAHLNEMHQLGNLPWPLSFSYGRAMQQAALKLWAKDMTGNFAKAQQVIYERAKENGLAALGKW 332          
BLAST of CN187743 vs. ExPASy Swiss-Prot
Match: ALF_ENCCU (Fructose-bisphosphate aldolase OS=Encephalitozoon cuniculi GN=ECU01_0240 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  379 AKYTLTMLRRRVPPAVPGIMFLFGGQSEVEATLNLNAMN--QAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLL 612
            A +TL  L   +P  +PGI+FL GG    +A   LNA+N  +    W +SFS+ARAL + VL+TW+G   N E AQK LL
Sbjct:  241 ATFTLRALLSTIPCGIPGIVFLSGGHGSEDAIGFLNAINMERGCRTWSLSFSFARALTDGVLETWRGDDSNIEEAQKILL 320          
The following BLAST results are available for this feature:
BLAST of CN187743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ALDCA_DANRE2.382e-2147.83Fructose-bisphosphate aldolase C-A OS=Danio rerio ... [more]
ALDOB_RAT4.493e-2047.83Fructose-bisphosphate aldolase B OS=Rattus norvegi... [more]
ALF_LYMST1.496e-1560.00Fructose-bisphosphate aldolase (Fragment) OS=Lymna... [more]
ALF1_XYLFA1.953e-1547.87Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF1_XYLFT2.551e-1547.87Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF1_XANCP1.072e-1344.68Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF1_XANAC1.072e-1344.68Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF_ENCCU6.503e-1146.25Fructose-bisphosphate aldolase OS=Encephalitozoon ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187743 ID=CN187743; Name=CN187743; organism=Citrus sinensis; type=EST; length=612bp
AAAANANAANGANTCCCTTTAAAGAGCCCCCCTTTCGCTGGGCTACAGTT
TGTAAAATCTTTTCTTATCTCACAGGTTTTATTCAACCTCTCTAGTTATT
AGGTGGGTAAAAGAAAATGAAAAAACTTCTAATACAAATCTTGTCCGTAT
CAATCGCTTGCCCCCAAAAAAATTTTAAAAAAAGGGAAGGAACCAAAACA
AAAGCAAGTGCGCAATGACACAAGTGTCATGAGTTGCCTCAGGCAGGCTC
AAACTGCATAGTATATTATTGGCTTAGTAAGTGTAGCCCTTGACAAACAT
TCCTTTCTTGGCTTCCTCGCTTTCACCTTCTGCGGAGTACGTCCCAAGCT
GCGCCAAGGAATTTGCCTTTGCACGCACCAATAGTGACTTTTGTGCAGCT
TCAGTATTCTCAGGACGACCTTGCCATGTCTTAAGAACAGTGTTCTGAAG
TGCACGGGCATAAGAAAAGGACACGTGCCAGGGGTTGGGGGCTTGGTTCA
TCGCATTCAAGTTCAATGTTGCTTCCACTTCTGATTGTCCTCCAAACAAA
AACATGATTCCTGGGACTGCAGGGGGTACTCTCCTCCTGAGCATTGTAAG
TGTATATTTAGC
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