CN187741

Overview
NameCN187741
Unique NameCN187741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2618 contig Csv1_Contig2618:1..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_THETN (Pseudouridine-5'-phosphate glycosidase OS=Thermoanaerobacter tengcongensis GN=psuG PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.917e-62
Identity = 130/231 (56.28%), Postives = 159/231 (68.83%), Query Frame = 3
Query:   84 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            + +S EV  AL     VVALESTIISHGMPYPQN ETA+ +E IVR NGAVPATIAI+ G   +GL+ EELE +     +  K ++RD+  V+A   N ATTVSATM  A++ GI VFVTGGIGGVHR  E T DIS+DL EL  T VAV+ AG K+ILD+PRTLEYLET GV V  ++T EFPAF+T  SG KV  RV+   + A++I     L L  G++I  PIP E+
Sbjct:    5 IDLSEEVKSALEERRPVVALESTIISHGMPYPQNIETARALEEIVRENGAVPATIAIIGGKIKIGLNEEELEFMGT-SKEILKASKRDLPVVLAKGLNAATTVSATMICANLAGIKVFVTGGIGGVHRGAEETFDISADLQELANTNVAVVCAGAKAILDLPRTLEYLETFGVPVIGFRTEEFPAFYTRESGLKVDYRVEDEVEAAKVIKTKWDLGLKGGILIANPIPEEY 234          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_GEOKA (Pseudouridine-5'-phosphate glycosidase OS=Geobacillus kaustophilus GN=psuG PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.622e-61
Identity = 125/227 (55.07%), Postives = 161/227 (70.93%), Query Frame = 3
Query:   93 SPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            S EV++A +    +VALESTIISHGMPYP+N +TAK+VE I+R+ GAVPATIAI      +GL+  ELE+L       +K +RRD+ +VVA + +GATTV+ TM  A M GI VF TGGIGGVHR  E TMDIS+DL EL RT VAV+ AG KSILD+  TLEYLETHGV V  Y+T+  PAF++ TS  +V  R+DS ++ A+ ++   KL L  G+VI  P+P+E
Sbjct:    8 SEEVAQAKAEKKPIVALESTIISHGMPYPENVQTAKDVERIIRDRGAVPATIAIFNEKIKIGLTEGELEQLGT-SHDVEKVSRRDLPYVVAMKKHGATTVAGTMICAEMAGIRVFATGGIGGVHRGAEQTMDISADLQELARTNVAVVCAGAKSILDLGLTLEYLETHGVPVIGYQTDVLPAFYSRTSPFRVDYRLDSAKEIAQFLETKWKLGLNGGVVIANPVPKE 233          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG2_RHIL3 (Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=psuG2 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.622e-61
Identity = 125/227 (55.07%), Postives = 161/227 (70.93%), Query Frame = 3
Query:   87 KISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIP 767
            ++S E++EA++ G  VVALESTII+HGMPYP N ETA  VE ++R NGA+PATIA+++G   VGL  +ELE LA+      K + RD+A  +    +  TTVSATM  A + GI VF TGG+GGVHR  E T DIS+DLTELGRT  AV+ AG+KSILDI +TLEYLET  V V AY T +FPAFFT  SG K   R+D+PE+ A+ + ++ +L  G+GL+I  PIP
Sbjct:    7 RLSREMAEAIAAGSPVVALESTIITHGMPYPANLETALGVETVIRENGAIPATIAVVKGELRVGLEHDELEELAQ-SKGIVKASGRDLAVAMIRGQSAGTTVSATMLMADLAGIDVFATGGVGGVHRGAEQTFDISADLTELGRTKTAVVCAGVKSILDIAKTLEYLETQRVPVIAYGTEDFPAFFTRRSGFKADHRLDTPEEIAKAMWLHHQLGTGTGLLIANPIP 232          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_NOCSJ (Pseudouridine-5'-phosphate glycosidase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=psuG PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.119e-61
Identity = 128/229 (55.90%), Postives = 162/229 (70.74%), Query Frame = 3
Query:   81 LVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIP 767
            L+ ++ EV++AL  G  VVALESTIISHGMPYPQN   A EVE I+R  GAVPATIA+LEG P +GL+ ++LE LA       K + RD+  VVA R +GATTV+ATM  A++ GI VFVTGG+GGVHR  + + D S+DLTELG T VAVISAG+KSILDI  TLE LET GV V AY ++EFP+F++ +SG   P RVDS  + A ++     L +  G+V+  PIP
Sbjct:    7 LLTLTDEVADALRDGAPVVALESTIISHGMPYPQNVAMATEVEGIIRAAGAVPATIAVLEGRPRIGLTADDLELLAS-DEDVAKVSVRDLPFVVARRSHGATTVAATMRLAALAGIRVFVTGGLGGVHRGAQQSFDESADLTELGSTDVAVISAGVKSILDIGLTLERLETLGVPVLAYGSDEFPSFYSRSSGHAAPMRVDSAAEVAAVMAAKWDLGIAGGVVVANPIP 234          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_BRAHW (Pseudouridine-5'-phosphate glycosidase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=psuG PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.119e-61
Identity = 125/234 (53.42%), Postives = 161/234 (68.80%), Query Frame = 3
Query:   75 KNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            +  + IS EV EAL    AVVALESTIISHGMPYP+N E+A   E  +R N AVPATIAI++G   VGL+ EELE +        K++RRD+  ++A + +GATTV+ TM  AS+ GI VF TGGIGGVHR+ + T DIS+DL EL +T VAV+ AG KSILDI  T+EYLET G+ V  YKT  FPAF+T  SG KV  ++D+ +D A ++D   KL L  G+++  PIP E+
Sbjct:    5 EEFLDISEEVKEALHEKKAVVALESTIISHGMPYPENVESALNSEKNIRENNAVPATIAIIKGRIKVGLNKEELEYMGS-NKNIAKSSRRDLPVMLALKKDGATTVTTTMIGASLAGIKVFATGGIGGVHRYAQETFDISADLQELSKTNVAVVCAGAKSILDIGLTIEYLETFGIPVLGYKTENFPAFYTRESGYKVDYKIDTTKDIANILDTKWKLGLNGGVLVCNPIPEEY 237          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_ALKMQ (Pseudouridine-5'-phosphate glycosidase OS=Alkaliphilus metalliredigens (strain QYMF) GN=psuG PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.767e-61
Identity = 124/231 (53.68%), Postives = 162/231 (70.13%), Query Frame = 3
Query:   84 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            ++ +PEV +A++ G  +VALESTIISHGMPYPQN ETAK+VE ++R  GAVPATIAI++G   VGL+ EEL  L +      K +RRD+  ++A   NGATTV++TM  A++ GI VFVTGGIGGVHR  + T+DIS+DL EL +T VAV+ AG+KSILDI  TLE LETHGV +  Y+T +FPAF+T  SG  V   V + E+ AR +     L L  G+V+  PIP  +
Sbjct:    8 LEYAPEVKKAIAEGRPIVALESTIISHGMPYPQNVETAKKVEDMIREGGAVPATIAIVKGKIKVGLTEEELMFLGQ-SKDVVKASRRDLPLIIAKELNGATTVASTMIIAALAGIKVFVTGGIGGVHRGAQETLDISADLMELAQTNVAVVCAGVKSILDIGLTLEVLETHGVPIVGYQTEDFPAFYTRKSGYGVDYAVANVEELARALKAKWDLDLKGGVVVANPIPEAY 237          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_METNO (Pseudouridine-5'-phosphate glycosidase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=psuG PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.052e-61
Identity = 123/229 (53.71%), Postives = 157/229 (68.56%), Query Frame = 3
Query:   81 LVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIP 767
            L+  +PEV  AL  G  VVALESTI++HGMP+PQN ETA+ V A+VR NGAVPA +A++ G   +GL  E L+ L     +  K +R D+ H VA   +G+TTV+ATM  A   GI VF TGGIGGVHR  E T+DIS+DL EL RTPVAV+ AG K+ILD+PRTLEYLET GV V  Y+T+ FPAF++  SG   P R+D+PE  A L+     L LG G+++  P+P
Sbjct:    5 LLDFAPEVRSALDAGAPVVALESTIVTHGMPHPQNVETARAVAAVVRANGAVPAIVAVVAGRIRIGLPEEILDWLGT-AKEVLKLSRADLPHAVAAGLHGSTTVAATMICAHRAGIRVFATGGIGGVHRGVEETLDISADLDELARTPVAVVCAGAKAILDLPRTLEYLETRGVPVVGYRTDRFPAFWSRDSGLPAPLRLDTPEAIAALMRTKEALDLGGGILVANPVP 232          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_DEIRA (Pseudouridine-5'-phosphate glycosidase OS=Deinococcus radiodurans GN=psuG PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.052e-60
Identity = 129/239 (53.97%), Postives = 159/239 (66.53%), Query Frame = 3
Query:   51 SNPIDSLAKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIP 767
            S P +    + + + PEV+ ALS G  VVALESTIISHGMPYPQN E A+ VE IVR+NGAVPATIA+L G   VGLS +ELE LA      QK + RD+   VA  G+GATTV++TM  A++ GI VF TGG GGVHR    TMDIS+DL EL RT V V+SAG+KSILDI  TLE LET GV       +EFPAF++  SG   P  V +P + AR++ V   L L  G+++  P+P
Sbjct:    3 SKPSNDRLHSYLDLQPEVAAALSQGRPVVALESTIISHGMPYPQNVEMARGVEQIVRDNGAVPATIAVLGGRLKVGLSADELELLAT-DKAVQKISTRDLPVTVALGGHGATTVASTMRIAALAGIRVFATGGTGGVHRGAGETMDISADLLELARTDVCVVSAGVKSILDIGLTLEVLETQGVPAITLGADEFPAFYSRRSGFSSPLTVQTPAEAARVLKVKWDLGLTGGVLLANPVP 240          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_PETMO (Pseudouridine-5'-phosphate glycosidase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=psuG PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.343e-60
Identity = 125/231 (54.11%), Postives = 157/231 (67.97%), Query Frame = 3
Query:   84 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            ++I  EV +AL     +VALESTIISHGMPYPQN E AK VE  +R  GAVPATIAI++G   VGLS EELE +A       K +R D+  ++A   N ATTV+ATM  A + GI VFVTGGIGGVHR+ + T DIS+DL EL +T VAVISAG K+ILD+  T EYLET GV V  Y+T+E P FF+  SG  VP RV++P++ A ++     L L  G+ I  PIP+E+
Sbjct:    7 LEIKEEVYQALKENRPIVALESTIISHGMPYPQNVEVAKNVEETIRERGAVPATIAIIDGKMKVGLSKEELEFMAT-SKNILKASRMDLPVILAKGFNAATTVAATMIIAELAGIKVFVTGGIGGVHRNAQETFDISADLQELAKTNVAVISAGPKAILDLQLTKEYLETFGVPVIGYQTDELPCFFSRESGINVPYRVETPKEIASIMKTKWDLGLQGGIFIANPIPKEY 236          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_CHLSY (Pseudouridine-5'-phosphate glycosidase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=psuG PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.060e-60
Identity = 122/235 (51.91%), Postives = 157/235 (66.81%), Query Frame = 3
Query:   81 LVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMK---LKLGSGLVIGVPIPREH 776
            +++I+ EV+ AL  G AVVALEST+ISHG+PYP N   A+ +EA VR  GAVPATI ++EG+P +GL+  ELERLA  G + +K +RRDI   +    +GATTV+ATM  A+  GI VF TGGIGGVHR   H+ D+S+DLTELGRTPV V+ AG K+ILD+P TLEYLET GV V  Y+T EFPAF+T  SG  V          AR+  +  +        G+++ VP P  H
Sbjct:    1 MLRIAEEVTTALEEGRAVVALESTLISHGLPYPHNLAVAEGLEAEVRAAGAVPATIGLIEGVPVIGLNGNELERLAVGGDRVRKLSRRDIGAAIVDHADGATTVAATMALAAAAGIEVFATGGIGGVHRGATHSWDVSADLTELGRTPVLVVCAGAKAILDLPATLEYLETQGVPVVGYQTVEFPAFYTPHSGLTVAAVAADALAAARMWRIQRRYHTFAAPGGMLLCVPPPERH 235          
The following BLAST results are available for this feature:
BLAST of CN187741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PSUG_THETN1.917e-6256.28Pseudouridine-5'-phosphate glycosidase OS=Thermoan... [more]
PSUG_GEOKA1.622e-6155.07Pseudouridine-5'-phosphate glycosidase OS=Geobacil... [more]
PSUG2_RHIL31.622e-6155.07Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizob... [more]
PSUG_NOCSJ2.119e-6155.90Pseudouridine-5'-phosphate glycosidase OS=Nocardio... [more]
PSUG_BRAHW2.119e-6153.42Pseudouridine-5'-phosphate glycosidase OS=Brachysp... [more]
PSUG_ALKMQ2.767e-6153.68Pseudouridine-5'-phosphate glycosidase OS=Alkaliph... [more]
PSUG_METNO8.052e-6153.71Pseudouridine-5'-phosphate glycosidase OS=Methylob... [more]
PSUG_DEIRA1.052e-6053.97Pseudouridine-5'-phosphate glycosidase OS=Deinococ... [more]
PSUG_PETMO2.343e-6054.11Pseudouridine-5'-phosphate glycosidase OS=Petrotog... [more]
PSUG_CHLSY3.060e-6051.91Pseudouridine-5'-phosphate glycosidase OS=Chlorofl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187741 ID=CN187741; Name=CN187741; organism=Citrus sinensis; type=EST; length=778bp
CCCTCTTTTCTTATATCGGCTCTCTAAGATTGTCCAATATTCAAAATCAC
TCAAATCCCATTGATTCACTTGCTAAAAATTTAGTGAAGATCTCTCCAGA
GGTCAGTGAAGCTTTGTCGCATGGCCACGCTGTTGTTGCTCTTGAATCCA
CAATTATTTCCCATGGGATGCCGTATCCTCAAAATTTTGAGACAGCCAAG
GAGGTGGAGGCCATTGTGAGAAATAATGGAGCAGTTCCTGCAACGATTGC
TATTCTAGAGGGCCTTCCATGCGTAGGTTTGAGTACAGAAGAACTGGAAA
GGCTGGCTAAGTTAGGAAGTAAAGCTCAAAAGACAGCTCGGAGGGACATT
GCACATGTTGTGGCTACCAGAGGGAATGGAGCAACTACTGTTTCCGCGAC
CATGTTTTTTGCTTCTATGGTTGGCATTCCTGTGTTTGTAACTGGGGGAA
TTGGAGGTGTACATAGGCACGGCGAGCACACTATGGATATTTCATCAGAT
CTTACAGAGCTTGGAAGGACTCCAGTGGCCGTCATCTCTGCTGGCATAAA
GTCAATACTAGATATCCCCAGGACCCTCGAGTATTTGGAAACTCATGGAG
TTTGTGTTGCTGCTTATAAGACGAATGAGTTTCCGGCTTTTTTCACTGAA
ACCAGTGGCTCCAAGGTGCCTTGTCGTGTTGATAGCCCAGAAGATTGTGC
TCGGTTAATAGATGTAAACATGAAACTTAAGCTTGGATCTGGACTTGTGA
TTGGTGTCCCAATCCCAAGAGAACATGC
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