CN187741

Overview
NameCN187741
Unique NameCN187741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2618 contig Csv1_Contig2618:1..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_HERA2 (Pseudouridine-5'-phosphate glycosidase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=psuG PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.571e-56
Identity = 118/228 (51.75%), Postives = 152/228 (66.67%), Query Frame = 3
Query:   90 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            ++PEV  A ++G  VVALEST+ISHG+PYP N E A ++EA VR  GAVPATIA+++G   VGL+ E++E  A   +   K +RRDI + VA   +GATTV+ATM  A + GI VF TGGIGGVHR    T D+S+DL ELG++ V V+ AG KSILD+P TLE LET+GV V  Y T E PAF++  SG ++  RVD P   A     +     GSG+V+ VP P E
Sbjct:    6 LAPEVQAAFANGQPVVALESTVISHGLPYPHNREIALQLEATVRAGGAVPATIAVIQGQVHVGLTNEQIEHFAT-ATDVLKLSRRDIGYAVAAGRDGATTVAATMAIAELAGIQVFATGGIGGVHRGARDTWDVSADLGELGKSSVLVVCAGAKSILDLPATLEVLETYGVPVVGYTTEELPAFYSAHSGLQLGRRVDDPTQAAAAWAAHRLYGGGSGMVLAVPPPVE 232          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_COPPD (Pseudouridine-5'-phosphate glycosidase OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=psuG PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 111/231 (48.05%), Postives = 152/231 (65.80%), Query Frame = 3
Query:   81 LVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            +++I+P V EA+     VVALESTII+HGMPYP N  TA EVE +++  GAVPATI ++ G+  VGLS EE+  L++      K + +D++   A + +G TTVSATMF +   GI VF TGGIGGVHR    + D+S+DL  LG  P+ V+ AG K+ILD+P TLEYLET GV V  YKT+EFPAF+   SG K+   V +P + A++I     L++   +++G P P E
Sbjct:    1 MLQIAPHVKEAIETLKPVVALESTIITHGMPYPANLHTALEVEQVIKEAGAVPATIGVINGIIKVGLSEEEITYLSQ-AKDLHKISLKDLSVAAAKKLSGGTTVSATMFASYKAGIQVFATGGIGGVHRDARESFDVSTDLEALGSIPITVVCAGAKAILDLPATLEYLETKGVLVVGYKTDEFPAFYYGRSGLKLEHSVTTPGELAQIIRERDALEINKAILVGNPPPEE 230          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_ROSS1 (Pseudouridine-5'-phosphate glycosidase OS=Roseiflexus sp. (strain RS-1) GN=psuG PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.921e-54
Identity = 119/232 (51.29%), Postives = 151/232 (65.09%), Query Frame = 3
Query:   84 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQ--KTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            + +S EV  AL  G  VVALEST+ISHG+PYP N E A  +E  VR+ GAVPAT+ I+ G+P VG+    + R A         K +RRDI +VVA  G+GATTV+ATM  A + G+ VF TGGIGGVHR    T D+S+DLTEL RTPV V+ AG K+ILD+P TLEYLET GV V  ++T EFPAF++ +SG  V    D+    AR    +  L  G+G+V+ VP P E
Sbjct:   12 IAVSAEVQAALDAGQPVVALESTVISHGLPYPHNLELALAMEQEVRDQGAVPATVGIVAGVPTVGMDAAAIRRFAHPDPHHPPLKVSRRDIGYVVAAGGDGATTVAATMALAHLAGVQVFATGGIGGVHRGARETWDVSADLTELERTPVLVVCAGAKAILDLPATLEYLETGGVPVLGWRTAEFPAFYSVSSGLPVAYAQDA-SFVARAWKAHRALG-GAGMVLAVPPPVE 241          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_MYCAP (Pseudouridine-5'-phosphate glycosidase OS=Mycoplasma agalactiae (strain PG2) GN=psuG PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.921e-54
Identity = 117/231 (50.65%), Postives = 147/231 (63.64%), Query Frame = 3
Query:   84 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            +  S EV  AL H   VVALESTII+HGMPYP+N E A  VE I+R  GAVPATIAI+ G+  VGL  +E+  LAKL     KT++RD  +V+A + NG TTVS T+  A  VGIPVF TGGIGGVHR  E T DIS DL EL    V V+ AG K ILD+  TLEYLET GV V  Y +++ PAF++ +S   V   V S  + A ++    K   G G+++  PIP ++
Sbjct:    3 IVFSKEVESALKHKRPVVALESTIITHGMPYPKNVEMALNVENIIRKQGAVPATIAIINGIIHVGLENDEINELAKL-KDVIKTSKRDFGYVLANKKNGGTTVSGTVLVAQKVGIPVFATGGIGGVHRGAEITFDISRDLDELSTNNVLVVCAGAKLILDLGLTLEYLETKGVEVLGYNSDKLPAFYSSSSEFNVTYNVHSASEVAAIMKAKWKFTNG-GIILANPIPEQY 231          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_RHILO (Pseudouridine-5'-phosphate glycosidase OS=Rhizobium loti GN=psuG PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.509e-54
Identity = 116/235 (49.36%), Postives = 147/235 (62.55%), Query Frame = 3
Query:   72 AKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            A+  + I   V++AL+ G  VVALESTII+HGMPYP N   A  VE I+ + GAVPATIA++ G   +GLS  E E LA  G  A K +R D+   VA    G TTV+ATM  A MVGI VF TGGIGGVH+  E + DIS+DL EL RTPV V+SAG K+ILDI +TLE LET GV V  +     PAF++  S  + P  +  PE+ A      + L LG G+++  P+P  H
Sbjct:    6 ARPFIDIHAPVAQALAAGRPVVALESTIITHGMPYPDNGAMAANVEKIISDGGAVPATIAVIGGRIKIGLSDGERESLAMTGD-AMKLSRADLGFAVAQGRTGGTTVAATMIAAEMVGIKVFATGGIGGVHKGAEKSFDISADLDELARTPVIVVSAGAKAILDIEKTLEVLETRGVPVVGHGCETMPAFWSRQSPFRAPLTLYKPEEIAHFFRTRVALGLGGGVLVANPVPENH 239          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_ROSDO (Pseudouridine-5'-phosphate glycosidase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=psuG PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.623e-53
Identity = 114/225 (50.67%), Postives = 147/225 (65.33%), Query Frame = 3
Query:   93 SPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIP 767
            S EV+ A + G  +VALESTII+HGMPYPQN E A++VE  +R  G  PATIA+++G   +GL   +LE LA+    A K +R DIA  +AT G GATTVSATM  A + GI VF TGGIGGVHR  E + D+S+DL EL +TPV V++AG K+ILD+ +TLE LET GV V     + FPAF++  S  K P R+D P   A    + + L L  G ++  PIP
Sbjct:    9 SAEVAAAKAAGRPIVALESTIITHGMPYPQNLEVARQVEDDLRAAGVTPATIAVMDGTLHIGLEAHQLEALAQAKGVA-KLSRADIAACMATGGTGATTVSATMIAAHLAGISVFATGGIGGVHRGAESSFDVSADLLELAQTPVTVVAAGAKAILDVAKTLEVLETQGVPVITVGQDSFPAFWSAESVFKSPLRMDDPVGIAAAHQMRVDLGLPGGQLVANPIP 232          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_SERP5 (Pseudouridine-5'-phosphate glycosidase OS=Serratia proteamaculans (strain 568) GN=psuG PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.071e-53
Identity = 113/228 (49.56%), Postives = 149/228 (65.35%), Query Frame = 3
Query:   90 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            I PEV  AL   HAVVALES +I+HG+ YP N ETA  VEA VR +GAVPATI I +G   VG+  E++ER A     A K +  ++  V+A +  GATTV++++  A + GI  F + GIGGVHR GE +MDISSDL +  RT V V+ AG K+ILDI RTLE+LET  V V  Y+T++FPAF+  +SG + P R+DS E  A+ ID+N  L   + +V+  P   E
Sbjct:   11 IHPEVKAALESRHAVVALESNVITHGLNYPANVETALAVEAAVRRSGAVPATIGICDGEILVGMHREQIERFATTPGIA-KVSSNNLPFVLAQKSMGATTVASSLMLAELAGIGFFASAGIGGVHRGGEDSMDISSDLIQFTRTNVTVVCAGAKNILDIGRTLEFLETQCVPVVTYQTDDFPAFYCRSSGYRSPQRLDSLEAIAQAIDINRALPGSAAMVVAAPTKPE 237          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_DICZE (Pseudouridine-5'-phosphate glycosidase OS=Dickeya zeae (strain Ech1591) GN=psuG PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.923e-52
Identity = 108/228 (47.37%), Postives = 152/228 (66.67%), Query Frame = 3
Query:   81 LVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPI 764
            L++ S EV +AL  G  VVALEST+I+HG+PYP N  TA+++EA+VR  GA+PATI I  G   +G+S  ++ER         K + RDI  ++A  G GATTV++++  A + GIP F + GIGGVHR  E +MDIS+DL +  R+ VAV+ AG KSILD+  TLEYLET  V + +Y++++FPAF+  +SG   P R+D P   AR I+++ KL   S ++I  PI
Sbjct:   10 LLRFSDEVKDALHTGKPVVALESTVIAHGLPYPDNVATAQKIEAVVRAEGAIPATIGIENGRFLIGMSDADIERFGATNG-IPKASSRDIPVILAQGGKGATTVASSLVAADLAGIPFFASAGIGGVHRGAEKSMDISADLVQFTRSRVAVVCAGAKSILDLGLTLEYLETQCVPIISYQSDDFPAFYCRSSGFPSPHRLDDPAVVARSIEMHWKLGNRSSVLITHPI 236          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_RUBXD (Pseudouridine-5'-phosphate glycosidase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=psuG PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.988e-51
Identity = 109/230 (47.39%), Postives = 145/230 (63.04%), Query Frame = 3
Query:   84 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            V+ +PEV+EAL  G  VVALEST+ISHG+P P N   A+ +E  VR  GAVPAT+ ++ G+  VGL  EELE LA    +  K + RD+    AT  +GATTV+AT   A++ GI +F TGG+GGVHR    + D+S+DL  L R PVAV+ +G+KSILD+P TLE LET GV V  +++  F  F+   SG  +   V+   + A LI     L LG G+VI  P+P E
Sbjct:    4 VQPAPEVAEALEGGRPVVALESTLISHGLPRPDNLRVARALEEAVRREGAVPATVGVVGGVARVGLGPEELELLAS--GEVPKLSARDLPAAAATGSSGATTVAATAHLAALCGIKLFATGGLGGVHRGARESWDVSADLAALSRAPVAVVCSGVKSILDVPATLEQLETLGVPVVGFRSRSFAGFYLTDSGCALDWSVEDEGEAAALIRALPGLGLGCGVVISNPLPPE 231          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG1_PHOLL (Pseudouridine-5'-phosphate glycosidase 1 OS=Photorhabdus luminescens subsp. laumondii GN=psuG1 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.988e-51
Identity = 112/229 (48.91%), Postives = 151/229 (65.94%), Query Frame = 3
Query:   87 KISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            K S EV EAL  G  VVALES +I+HG+ YP N  TAK VE  VR +GA+PATI I +G   +G+S E++E+ A   S   K   RDI  V+A+ G GATTV++++  A + GI  F + GIGGVHR  E +MDIS+DLT+L R+ VAV+ AG K+ILDI  TLE+LET  V V +Y++++FPAF+  +SG K P R+D     A+ I++N  L  G G++I  P   E
Sbjct:   10 KFSLEVKEALESGKPVVALESNVITHGLDYPDNVTTAKNVEQAVRESGAIPATIGIDKGEFLIGMSDEQIEKFAT-ASHVPKVTSRDIPVVLASGGMGATTVASSILAAEIAGIKFFCSAGIGGVHRGAETSMDISADLTQLTRSRVAVVCAGAKNILDIGLTLEFLETWNVPVISYQSDDFPAFYCRSSGFKSPQRLDELAVIAKAIEINWMLPGGKGVLITTPTKPE 237          
The following BLAST results are available for this feature:
BLAST of CN187741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PSUG_HERA21.571e-5651.75Pseudouridine-5'-phosphate glycosidase OS=Herpetos... [more]
PSUG_COPPD1.126e-5448.05Pseudouridine-5'-phosphate glycosidase OS=Coprothe... [more]
PSUG_ROSS11.921e-5451.29Pseudouridine-5'-phosphate glycosidase OS=Roseifle... [more]
PSUG_MYCAP1.921e-5450.65Pseudouridine-5'-phosphate glycosidase OS=Mycoplas... [more]
PSUG_RHILO2.509e-5449.36Pseudouridine-5'-phosphate glycosidase OS=Rhizobiu... [more]
PSUG_ROSDO3.623e-5350.67Pseudouridine-5'-phosphate glycosidase OS=Roseobac... [more]
PSUG_SERP58.071e-5349.56Pseudouridine-5'-phosphate glycosidase OS=Serratia... [more]
PSUG_DICZE8.923e-5247.37Pseudouridine-5'-phosphate glycosidase OS=Dickeya ... [more]
PSUG_RUBXD1.988e-5147.39Pseudouridine-5'-phosphate glycosidase OS=Rubrobac... [more]
PSUG1_PHOLL1.988e-5148.91Pseudouridine-5'-phosphate glycosidase 1 OS=Photor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187741 ID=CN187741; Name=CN187741; organism=Citrus sinensis; type=EST; length=778bp
CCCTCTTTTCTTATATCGGCTCTCTAAGATTGTCCAATATTCAAAATCAC
TCAAATCCCATTGATTCACTTGCTAAAAATTTAGTGAAGATCTCTCCAGA
GGTCAGTGAAGCTTTGTCGCATGGCCACGCTGTTGTTGCTCTTGAATCCA
CAATTATTTCCCATGGGATGCCGTATCCTCAAAATTTTGAGACAGCCAAG
GAGGTGGAGGCCATTGTGAGAAATAATGGAGCAGTTCCTGCAACGATTGC
TATTCTAGAGGGCCTTCCATGCGTAGGTTTGAGTACAGAAGAACTGGAAA
GGCTGGCTAAGTTAGGAAGTAAAGCTCAAAAGACAGCTCGGAGGGACATT
GCACATGTTGTGGCTACCAGAGGGAATGGAGCAACTACTGTTTCCGCGAC
CATGTTTTTTGCTTCTATGGTTGGCATTCCTGTGTTTGTAACTGGGGGAA
TTGGAGGTGTACATAGGCACGGCGAGCACACTATGGATATTTCATCAGAT
CTTACAGAGCTTGGAAGGACTCCAGTGGCCGTCATCTCTGCTGGCATAAA
GTCAATACTAGATATCCCCAGGACCCTCGAGTATTTGGAAACTCATGGAG
TTTGTGTTGCTGCTTATAAGACGAATGAGTTTCCGGCTTTTTTCACTGAA
ACCAGTGGCTCCAAGGTGCCTTGTCGTGTTGATAGCCCAGAAGATTGTGC
TCGGTTAATAGATGTAAACATGAAACTTAAGCTTGGATCTGGACTTGTGA
TTGGTGTCCCAATCCCAAGAGAACATGC
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