CN187741

Overview
NameCN187741
Unique NameCN187741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_FERNB (Pseudouridine-5'-phosphate glycosidase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=psuG PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.784e-51
Identity = 108/228 (47.37%), Postives = 146/228 (64.04%), Query Frame = 3
Query:   90 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            IS +V +AL  G  V+ALEST+I+HG+PYP N ETAK +E +   NG VPATI IL+G   VG+S E++  +  L  +  K   R+I + V  + + ATTVSATM  A + GI VF TGGIGGVH       D+S D+TE+ ++ V V+SAG KSILD+ +T+E+LET  V V  YKTN+FP F+   S   +  RVDSPED A++      L +   L++  PIP+E
Sbjct:    3 ISEKVKKALEDGIPVIALESTVIAHGLPYPHNVETAKMLEEMALENGVVPATIGILKGEIIVGMSQEQINEM--LADEPLKIGTREIPYAVGMKKSAATTVSATMRIAKIAGIDVFATGGIGGVHIGD---WDVSQDITEMAKSDVIVVSAGCKSILDVKKTIEFLETFQVTVVGYKTNKFPIFYEGLSDFNLEHRVDSPEDIAKIFRAKKSLGIEGALLVANPIPQE 225          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_STRGG (Pseudouridine-5'-phosphate glycosidase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=psuG PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.749e-50
Identity = 108/208 (51.92%), Postives = 139/208 (66.83%), Query Frame = 3
Query:   90 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKA-QKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLI 710
            +S EV  ALS G  VVALESTII+HG+P P+N   A+E+E +VR+ GAVPAT+A+L+G   +GL  ++LER+A  G  A +K   RD+A  +A   +GATTVSAT F A+  GI VF TGG+GGVHR      D S+DL  L RT + V+ AG+KSILD+P TL+ LET GV V  Y T  FP F+  +SG  V   V SPE+ A +I
Sbjct:   25 LSAEVRAALSTGLPVVALESTIIAHGLPRPRNLSVARELEGLVRSAGAVPATVAVLDGRARIGLDGDQLERVA--GDPAVRKLGHRDLAPALAAGADGATTVSATAFLAARAGIGVFATGGLGGVHREWAENQDESADLRLLARTGITVVCAGVKSILDVPATLQRLETLGVPVVGYGTGHFPGFYLSSSGEPVDWTVHSPEEVAEVI 230          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_SALTO (Pseudouridine-5'-phosphate glycosidase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=psuG PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.749e-50
Identity = 114/239 (47.70%), Postives = 148/239 (61.92%), Query Frame = 3
Query:   60 IDSLAKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGS-GLVIGVPIPRE 773
            +D++    ++   EV++AL  G  VVALESTI+SHG+P P N   A+E+E  VR+ GAVPATI ++ G   VGL   EL RLA +   A K + RD+A   AT  +GATTV+AT   A+  GI VF TGG+GGVHR    + D S+DLT L RTP+AV+ AG+KSILD   TLE LET GV V  Y+T  FP F+    G  +   VDSPE  A  +    +  L S GLV+  P+P +
Sbjct:   15 LDAVTTFHLRHGVEVADALRVGRPVVALESTIVSHGLPRPDNLRVAREIEQTVRDAGAVPATIGMVAGQLVVGLDDAELTRLATVDDVA-KLSVRDLAVAAATDADGATTVAATSAVAAAAGIRVFATGGLGGVHREAAQSFDESADLTTLARTPIAVVCAGVKSILDSGATLERLETLGVGVVGYRTRRFPGFYLTDGGFDLDWSVDSPEQVAAALAAQEQHGLHSGGLVVANPLPTD 252          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_SACEN (Pseudouridine-5'-phosphate glycosidase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=psuG PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.749e-50
Identity = 108/232 (46.55%), Postives = 144/232 (62.07%), Query Frame = 3
Query:   78 NLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            +L  IS EV +AL  G  VVALESTII+HG+P P+N   A++ E  +R+ G VPATI ++ G P VGL+ E++E LA     A K + RD+   VA   +G TTV+AT F A   GI VF TGG+GGVH     T D S+DL  L  TP+ ++SAG KSILD+  TLE LET  + V  Y+T  FP F+   SG  +   VD+P++ A L++    L+L S L++  PIP E
Sbjct:    4 SLPVISTEVRQALDAGRPVVALESTIITHGLPRPRNLAVARDAERQLRDAGVVPATIGVVAGTPTVGLTGEQIEELAA-DEAAVKISTRDLPVAVARGASGGTTVAATAFLARKAGIRVFATGGLGGVHHGAATTFDESADLVTLASTPLVLVSAGAKSILDLAATLERLETLNIPVVGYRTRRFPGFYVADSGHDLEHSVDTPQEVAALVEARDALELRSALLVANPIPPE 234          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_THEAB (Pseudouridine-5'-phosphate glycosidase OS=Thermosipho africanus (strain TCF52B) GN=psuG PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.430e-49
Identity = 108/229 (47.16%), Postives = 149/229 (65.07%), Query Frame = 3
Query:   90 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            IS +V +AL     +VALEST+I+HG+PYP+N + A+E E IV  NG VPATI IL+G   VGLS E+L  L  +     K   R+I++ +A + + ATTVS+T   AS+ GI VF TGGIGGVHR GE   D+S D+ EL +T + V+SAG KSILDI +TLE+LET  V    YKT  FP F+   S  K+  +V++ ++ A + +   KLKL S +++  PIP ++
Sbjct:    3 ISEKVQKALEENKPIVALESTVIAHGLPYPENLKVAQEFEDIVYENGCVPATIGILKGKVIVGLSKEQLIEL--VDDNPIKVGTREISYAIAMKKSAATTVSSTAKIASLAGIKVFATGGIGGVHR-GE--WDVSQDIIELSKTNIIVVSAGCKSILDIKKTLEFLETFQVLTVGYKTEYFPIFYNRLSKEKI-YKVENADEIANIFNEKNKLKLESAILVANPIPEDY 225          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_MYXXD (Pseudouridine-5'-phosphate glycosidase OS=Myxococcus xanthus (strain DK 1622) GN=psuG PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.575e-48
Identity = 103/230 (44.78%), Postives = 137/230 (59.57%), Query Frame = 3
Query:   84 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            ++ S EV  AL  G  +VALE+++++ G+PYP N   A+  E  +R  GAVPA  AI++G  CVGL   E+ RLA+   +  K A RD A  +ATR  G TTVSAT   A+  GI VF TGGIGGVHR      DIS D+  L R PVAV+ AG KS+LD+P+T+E LET GV V    T+E P+F++  SG  +  R D  +  AR+     +     G++  VP P E
Sbjct:    3 LRFSEEVRRALEAGQPLVALETSVVAQGLPYPDNLAAARACEEAIRRAGAVPAATAIIDGQLCVGLEEPEMRRLAEGKERLLKVASRDFAVAMATRATGGTTVSATCEMAAAAGIRVFSTGGIGGVHRGASEHFDISQDIAALARFPVAVVCAGAKSVLDLPKTMELLETAGVPVIGVGTDELPSFYSRGSGIPLEHRADDVDTAARIARARFESLKQGGVLYTVPPPEE 232          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_KOSOT (Pseudouridine-5'-phosphate glycosidase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=psuG PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.515e-46
Identity = 99/214 (46.26%), Postives = 135/214 (63.08%), Query Frame = 3
Query:  132 VVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            +VALEST+I+HG+P+P NFETA  +E  V+  GA+P T+ I+ G   +GL+ +E+E LAK      K    +IA  +A R N ATTVSATM  A   GI VF TGGIGGVHR+     D+S D+ EL +T + V+ AG KSILD+ RT+E+LET  V V  Y+T+  P F T+ S  KV  R DSPE+   + +   KL +   +++  PIP +
Sbjct:    6 IVALESTVIAHGLPWPTNFETAVSMENKVKEKGAIPKTLGIINGEIKIGLTEKEIEHLAK-AKNVMKIGTAEIAAAIALRRNAATTVSATMRLAKNAGIDVFATGGIGGVHRNVP--WDVSQDIMELSKTRMIVVCAGFKSILDVERTIEFLETFQVTVVGYQTDYMPLFHTKESEYKVNIRADSPEEIVAIFNEKEKLGIEGAILVANPIPEQ 216          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_FRAAA (Pseudouridine-5'-phosphate glycosidase OS=Frankia alni (strain ACN14a) GN=psuG PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.848e-44
Identity = 98/230 (42.61%), Postives = 139/230 (60.43%), Query Frame = 3
Query:   84 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            + +S  V +AL+ G  VVALEST+I+HG+P P+N + A E+E + R  G  PATIA+++G+P VGL   +L R+A   +   K + RD+    AT   GATTV++T   A+ VGI +F TGG+GGVHR    + D S+DL  L   P+ V+SAG+KSILDI  TLE LET G+ V  Y+T+ FP F+   +   +  RV      A  +     L L S +V+  P+P +
Sbjct:    7 IVVSATVRDALAAGAPVVALESTLIAHGLPRPRNRDVAVELEELARARGVTPATIAVIDGVPRVGLDEPDLRRIAD-DANVIKLSVRDLPVACATGWTGATTVASTALLAARVGIRLFATGGLGGVHRGAGDSFDESADLVTLAAMPITVVSAGVKSILDIGATLERLETLGITVVGYRTSTFPGFYLPHTTYDLDWRVGDAGQVAATMAAADLLGLTSAIVVANPLPTD 235          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_THET2 (Pseudouridine-5'-phosphate glycosidase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=psuG PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.203e-42
Identity = 99/206 (48.06%), Postives = 131/206 (63.59%), Query Frame = 3
Query:  135 VALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVI 752
            VALES +++HG+PYP N E A  +E  VR  GA P TIA++ G   VGLS EE+E LA  G  A+K +  ++A ++A   +  TTV+AT+  A + GIPVF TGGIGGVH       D S+DL  L RTP+ V+S+G K+ILD+  TLE LET GV V  Y+T+  PAFF+  S   VP RVD+P + AR+      L LG  L++
Sbjct:    6 VALESAVLTHGLPYPLNLEVALALEEAVREEGATPKTIALVRGEVRVGLSPEEMEALAAGG--AEKASLWNLAALLAQGRSAGTTVAATVHLAHLHGIPVFATGGIGGVH---PEPYDESADLVALSRTPILVVSSGPKAILDLRATLERLETLGVSVVGYRTDRLPAFFSPDSPFPVPARVDTPMEAARVYLRARALGLGGVLLV 206          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_ANAD2 (Pseudouridine-5'-phosphate glycosidase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=psuG PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.203e-42
Identity = 103/240 (42.92%), Postives = 146/240 (60.83%), Query Frame = 3
Query:   84 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHR--HGE---HTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNM-KLKLGSGLVIGVP----IPRE 773
            V+++ EV  AL+ G  VVALE+++++ G+P P N E A+   A VR  GAVPA +A++ G   VG     LERLA    +  K + RD+A + A   +  TTV+AT   A++ GI VF TGGIGGVHR   GE      D+S+DL EL R PV V+SAG K+ILD+  T E LET GV V  ++T+E PAF+++ SG  +  RV+     AR++ ++   L    G+++ VP    +PRE
Sbjct:    5 VRLAEEVRAALAAGGPVVALETSVVAQGLPPPHNLEAARRCAAAVRAAGAVPAAVAVVAGAVVVGADDAALERLADPARRPAKASARDLAALCAAGRDAGTTVAATAAVAALAGIRVFATGGIGGVHRLAPGEPAAGAADVSADLAELARAPVCVVSAGPKAILDLAATAEALETLGVPVLGWRTSELPAFYSDGSGIALEHRVEDAAAAARVLRLHWDALGRREGVLLAVPPPEAVPRE 244          
The following BLAST results are available for this feature:
BLAST of CN187741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PSUG_FERNB5.784e-5147.37Pseudouridine-5'-phosphate glycosidase OS=Fervidob... [more]
PSUG_STRGG3.749e-5051.92Pseudouridine-5'-phosphate glycosidase OS=Streptom... [more]
PSUG_SALTO3.749e-5047.70Pseudouridine-5'-phosphate glycosidase OS=Salinisp... [more]
PSUG_SACEN3.749e-5046.55Pseudouridine-5'-phosphate glycosidase OS=Saccharo... [more]
PSUG_THEAB2.430e-4947.16Pseudouridine-5'-phosphate glycosidase OS=Thermosi... [more]
PSUG_MYXXD1.575e-4844.78Pseudouridine-5'-phosphate glycosidase OS=Myxococc... [more]
PSUG_KOSOT2.515e-4646.26Pseudouridine-5'-phosphate glycosidase OS=Kosmotog... [more]
PSUG_FRAAA6.848e-4442.61Pseudouridine-5'-phosphate glycosidase OS=Frankia ... [more]
PSUG_THET22.203e-4248.06Pseudouridine-5'-phosphate glycosidase OS=Thermus ... [more]
PSUG_ANAD22.203e-4242.92Pseudouridine-5'-phosphate glycosidase OS=Anaeromy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187741 ID=CN187741; Name=CN187741; organism=Citrus sinensis; type=EST; length=778bp
CCCTCTTTTCTTATATCGGCTCTCTAAGATTGTCCAATATTCAAAATCAC
TCAAATCCCATTGATTCACTTGCTAAAAATTTAGTGAAGATCTCTCCAGA
GGTCAGTGAAGCTTTGTCGCATGGCCACGCTGTTGTTGCTCTTGAATCCA
CAATTATTTCCCATGGGATGCCGTATCCTCAAAATTTTGAGACAGCCAAG
GAGGTGGAGGCCATTGTGAGAAATAATGGAGCAGTTCCTGCAACGATTGC
TATTCTAGAGGGCCTTCCATGCGTAGGTTTGAGTACAGAAGAACTGGAAA
GGCTGGCTAAGTTAGGAAGTAAAGCTCAAAAGACAGCTCGGAGGGACATT
GCACATGTTGTGGCTACCAGAGGGAATGGAGCAACTACTGTTTCCGCGAC
CATGTTTTTTGCTTCTATGGTTGGCATTCCTGTGTTTGTAACTGGGGGAA
TTGGAGGTGTACATAGGCACGGCGAGCACACTATGGATATTTCATCAGAT
CTTACAGAGCTTGGAAGGACTCCAGTGGCCGTCATCTCTGCTGGCATAAA
GTCAATACTAGATATCCCCAGGACCCTCGAGTATTTGGAAACTCATGGAG
TTTGTGTTGCTGCTTATAAGACGAATGAGTTTCCGGCTTTTTTCACTGAA
ACCAGTGGCTCCAAGGTGCCTTGTCGTGTTGATAGCCCAGAAGATTGTGC
TCGGTTAATAGATGTAAACATGAAACTTAAGCTTGGATCTGGACTTGTGA
TTGGTGTCCCAATCCCAAGAGAACATGC
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