CN187741

Overview
NameCN187741
Unique NameCN187741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2618 contig Csv1_Contig2618:1..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_GEMAT (Pseudouridine-5'-phosphate glycosidase OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=psuG PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.155e-41
Identity = 97/224 (43.30%), Postives = 135/224 (60.27%), Query Frame = 3
Query:  102 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            V EAL  G A+VALES++++ G+  P N E A+ +   V   GA+P   AI  G P +GL  E+LER  +     +K + RD+   +A   +GATTV+AT+   ++ G+ VF TGGIGGVHR  +   D S+DL EL RTPV V+ AG KSILD+P TLE LET GV V    T+E P FF+ ++G ++  R+D PE  AR    +  L   S +++  P P +
Sbjct:   14 VFEALERGAALVALESSVLAQGLEPPYNREAARRMTEAVTAVGAIPVITAISRGTPTLGLDDEDLERFLQRDG-VRKVSARDLGIAMADGADGATTVAATLALCALGGLEVFATGGIGGVHR--DAPFDESADLIELSRTPVIVVCAGAKSILDLPATLERLETLGVPVVGCGTDELPGFFSLSTGLRLTSRLDRPEQIARAWRAHRALGRESAMLVVQPPPAD 234          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_CORA7 (Pseudouridine-5'-phosphate glycosidase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=psuG PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.746e-39
Identity = 90/230 (39.13%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   84 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            ++ S EV  ALS+G  ++ LES ++SHG+PYP+N E     + I+R+NG VPA   I +   C+G S +++E L     K  K + RDIA  +A    GATT SA++    + GI +F T G+GGVHR    T+D+S+DL E+      V+SAG+K  LDIP+T E LE+ GV V  + T+EFPAF+   SG+ +      P + A     +++     G +I V   +E
Sbjct:    6 IEYSDEVQNALSNGLPILGLESNVLSHGLPYPRNLEMFNACDEIIRSNGVVPALTFIRDKRICIGASPKDVELLTD-DPKPIKVSARDIALCIAQGKVGATTASASIAICELAGIRIFSTAGLGGVHRDFSETLDVSADLHEISSRKTIVVSAGVKKFLDIPKTSEVLESLGVPVVGFGTSEFPAFYCRKSGAFLESFSQDPIEIATAAATHIETVGPGGFLILVAPSKE 234          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_THEMA (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga maritima GN=psuG PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.615e-38
Identity = 88/225 (39.11%), Postives = 133/225 (59.11%), Query Frame = 3
Query:  102 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            +   +  G  VV +E+T+  HG+P  +  E  +  + I R  G   A I IL+G    G+S EELE + + G  A K   R+I  VVA   N ATTVSAT+F +  +GI V VTGG GGVH      +D+S DLTE+  +   ++S+GIKSILD+  T E LET  + +  ++TNEFP FF+  SG +VP R+++ E+  ++ +   +++L   L++  P+P E+
Sbjct:    3 IESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREG--ADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVP-RIENVEEVLKIYESMKEMELEKTLMVLNPVPEEY 221          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_THELT (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=psuG PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.334e-38
Identity = 93/215 (43.26%), Postives = 129/215 (60.00%), Query Frame = 3
Query:  132 VVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            ++ALEST+I+HG+P+P N +TA E+E +    G    TI I+ G   VGLS EE+ ++A       K    +I   +A +   ATTVSATM  A +  I VF TGGIGGVH+  +   D+S DL EL RT + V+SAG KSILD+  T+E LET  + V  YKT+E PAF+ +++   +  RVDS E+ A +     K  L   +++  PIP EH
Sbjct:    4 ILALESTVIAHGLPFPINIDTAVELEELAAETGCSAKTIGIIAGQIKVGLSREEIVQIASR-KDVLKIGTAEIPFALAKKMWAATTVSATMRIAHLNNIKVFATGGIGGVHKIDQ--WDVSQDLAELSRTRMIVVSAGPKSILDLRSTVEMLETFQITVVGYKTDELPAFYCKSTSIHIN-RVDSFEEIASIFLFKEKFNLPGAVLVFNPIPDEH 214          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_THESQ (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga sp. (strain RQ2) GN=psuG PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.634e-37
Identity = 88/225 (39.11%), Postives = 133/225 (59.11%), Query Frame = 3
Query:  102 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            +   +  G  VV +E+T+  HG+P  +  E  +  + I R  G   A I IL+G    G+S EELE + + G  A K   R+I  VVA   N ATTVSAT+F +  +GI V VTGG GGVH      +D+S DLTE+  +   ++S+GIKSILD+  T E LET  + +  ++T+EFP FF+  SG +VP RV++ E+  ++ +   +++L   L++  P+P E+
Sbjct:    3 IESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREG--ADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVSQDLTEMSSSRAILVSSGIKSILDVEATFEMLETLEIPLIGFRTDEFPLFFSRKSGRRVP-RVENVEEVLKIYETMKEIELEKTLMVLNPVPEEY 221          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_THEP1 (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=psuG PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.640e-37
Identity = 88/225 (39.11%), Postives = 131/225 (58.22%), Query Frame = 3
Query:  102 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            +   +  G+ VV +E+T+  HG+P  +  E  +  + I R  G     I IL+G   VG+S EELE + + G  A K   R+I   VA   N ATTVSAT+F +  +GI V VTGG GGVH      +D+S DLTE+  +   ++S+GIKSILD+  T E LET  + +  +KT+EFP FF+  SG +VP RV+S E+  ++ +   ++     L++  P+P E+
Sbjct:    3 IESRIEKGNPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLVVIGILKGKIIVGMSEEELETMMREG--ADKIGTREIPIAVAKGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVSQDLTEMASSRTILVSSGIKSILDVEATFEMLETLEIPLVGFKTDEFPLFFSRKSGRRVP-RVESVEEVLKIYETMREIGFEKTLMVLNPVPEEY 221          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_THENN (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=psuG PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.691e-34
Identity = 87/225 (38.67%), Postives = 127/225 (56.44%), Query Frame = 3
Query:  102 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            V   L      V +E+T+  HG+P  +  E  ++ + I    G   A + +L+G   +G++ +EL  +   GS  +K   R+I   +A   N ATTVSAT+F     GI V VTGG GGVH  G   +DIS DLTE+  + + ++S+GIKSILD+  T E LET  + V  + T+EFP FF+  SG KV  RV++ E+  R+     +LKL   L++  P+P EH
Sbjct:    3 VENRLEKEKPAVGMETTVFVHGLPRKEAIELFRKAKKISEEMGFQLAVVGVLKGKIILGMNEDELTIMMNEGS--EKIGTREIPIALAKGMNAATTVSATIFLCKRFGIDVVVTGGTGGVHPGG---VDISQDLTEMASSRIILVSSGIKSILDVDATFEMLETLEIPVVGFMTDEFPLFFSRKSGKKVK-RVENVEEILRIYRTMEELKLEKTLMVLNPVPEEH 221          
The following BLAST results are available for this feature:
BLAST of CN187741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PSUG_GEMAT4.155e-4143.30Pseudouridine-5'-phosphate glycosidase OS=Gemmatim... [more]
PSUG_CORA71.746e-3939.13Pseudouridine-5'-phosphate glycosidase OS=Coryneba... [more]
PSUG_THEMA5.615e-3839.11Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]
PSUG_THELT7.334e-3843.26Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]
PSUG_THESQ1.634e-3739.11Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]
PSUG_THEP13.640e-3739.11Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]
PSUG_THENN1.691e-3438.67Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0004O24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187741 ID=CN187741; Name=CN187741; organism=Citrus sinensis; type=EST; length=778bp
CCCTCTTTTCTTATATCGGCTCTCTAAGATTGTCCAATATTCAAAATCAC
TCAAATCCCATTGATTCACTTGCTAAAAATTTAGTGAAGATCTCTCCAGA
GGTCAGTGAAGCTTTGTCGCATGGCCACGCTGTTGTTGCTCTTGAATCCA
CAATTATTTCCCATGGGATGCCGTATCCTCAAAATTTTGAGACAGCCAAG
GAGGTGGAGGCCATTGTGAGAAATAATGGAGCAGTTCCTGCAACGATTGC
TATTCTAGAGGGCCTTCCATGCGTAGGTTTGAGTACAGAAGAACTGGAAA
GGCTGGCTAAGTTAGGAAGTAAAGCTCAAAAGACAGCTCGGAGGGACATT
GCACATGTTGTGGCTACCAGAGGGAATGGAGCAACTACTGTTTCCGCGAC
CATGTTTTTTGCTTCTATGGTTGGCATTCCTGTGTTTGTAACTGGGGGAA
TTGGAGGTGTACATAGGCACGGCGAGCACACTATGGATATTTCATCAGAT
CTTACAGAGCTTGGAAGGACTCCAGTGGCCGTCATCTCTGCTGGCATAAA
GTCAATACTAGATATCCCCAGGACCCTCGAGTATTTGGAAACTCATGGAG
TTTGTGTTGCTGCTTATAAGACGAATGAGTTTCCGGCTTTTTTCACTGAA
ACCAGTGGCTCCAAGGTGCCTTGTCGTGTTGATAGCCCAGAAGATTGTGC
TCGGTTAATAGATGTAAACATGAAACTTAAGCTTGGATCTGGACTTGTGA
TTGGTGTCCCAATCCCAAGAGAACATGC
back to top