CN187740

Overview
NameCN187740
Unique NameCN187740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 7.984e-68
Identity = 125/218 (57.34%), Postives = 163/218 (74.77%), Query Frame = 1
Query:   88 DDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEED-----GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D ++ +++  ++   ++LLDNEIR+ + ELQR + E +                  LPYLV N+VE+++MN  ++ E       G N++LD+   GK  V+KTS+RQT+FLP+VGLVDPDKLKP DLVGVNKDSYLILDTLPSE+DSRVKAMEVDEKPTE Y+D+GGL+KQI+ELVEAIVLPM   ++F+ +G+R PKG L+YGPPGTGKTL+ARACA
Sbjct:   19 DQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACA 236          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.034e-67
Identity = 126/212 (59.43%), Postives = 159/212 (75.00%), Query Frame = 1
Query:   91 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D++  MTAD++ R ++LL+NE +VL+ E    +LE+DS                 LP+LV N+VEI++M  + E +              KCVV+K STRQTIFL   G+VD DKL+PGDLVG+NKDSY+ILDTLP EYDSRVKAME+DEKPTE+Y+DIGGL+KQIQELVEA+VLPMTHKERF+ +G++PPKGVL+YGPPGTGKTL+ARACA
Sbjct:   24 DEIFQMTADEVNRKAKLLENETKVLRSEHISKHLEMDSIQKRIKENNDKLQVNTQLPHLVANVVEIIDMVLDGETQPS------------KCVVVKASTRQTIFLAYPGIVDVDKLRPGDLVGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARACA 223          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.759e-67
Identity = 123/213 (57.75%), Postives = 161/213 (75.59%), Query Frame = 1
Query:   88 DDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            + ++ +   D++   +RLL+N+I+V+K E QR   E  +                 LPYLVGN+VEIL+M P++   ++ AN + ++ R GK  V+KTSTRQTIFLP++GLV+P++L PGDL+GVNKDSYLI+D LPSEYDSRVKAMEVDEKPTE Y+DIGGL KQI+EL EAIVLPM   ++F+KLGV+PPKG L++GPPGTGKTL+ARACA
Sbjct:   28 EQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACA 240          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.320e-41
Identity = 88/199 (44.22%), Postives = 123/199 (61.81%), Query Frame = 1
Query:  136 RLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEV--DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            R+L++E R+L+  +     ++ +                 LPYLVGN+VE+L+       E  G              V+  STR + +LP+ GL+   +L+PGDLV ++KD+ ++ + LP +YD +V  M +  D KP E Y DIGGLE+QI+EL EAIVL +TH ERF+KL ++PPKGVL+YGPPGTGKTLMARACA
Sbjct:   26 RMLNSETRILQSRVNTIKHDISTKNASIAENMERIRLNKQLPYLVGNVVEVLD-------EHSG--------------VVNASTRMSSYLPITGLIPNSELRPGDLVALHKDTNIVFEKLPPDYDMKVGGMVLKSDAKPDETYEDIGGLERQIEELNEAIVLSLTHPERFEKLNIKPPKGVLMYGPPGTGKTLMARACA 203          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.775e-34
Identity = 85/221 (38.46%), Postives = 124/221 (56.11%), Query Frame = 1
Query:   70 EDPNLEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXL--PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            ++ NL++D L     +++   +R+ + E R+LK EL++  LE ++                    P +VG +V                  D   +RK   VV+K+ST  +  + V   V+PD L PG  V +N+ +  ++D LP   D R KAMEVDE+P   Y DIGGLEKQ+QE+ E + LP+ H E F+K+G+ PPKG+LLYGPPGTGKTL+A+A A
Sbjct:   30 DNSNLKNDLLK----EELQEKARIAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVV------------------DKVGERK---VVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVA 225          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31
Identity = 75/194 (38.66%), Postives = 109/194 (56.19%), Query Frame = 1
Query:  145 DNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D EIR+LK++++    E  S                  PY+   ++E+++ N                      VV+K+ST   + + V   VD   LKPG +V +N     I+D LP  YD  VKAMEV+E+P   + D+GGLE+QI+E+ EA+VLP+ +   F++LG+ PPKGVLL+GPPGTGKTL+A+A A
Sbjct:   22 DVEIRILKDKVRSLTKEKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNR---------------------VVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGKTLLAKAVA 194          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 79/200 (39.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query:  127 RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            R  + L+ E+ + ++E      EL                    P +VG + EIL+         DG             V++K+ST       V   VD ++L+PG  V +N+ S  ++D LPSE DSRV AMEVDE P   Y+DIGGL++QI+E+ E +  P+   E F+K+GV PPKGVLLYGPPGTGKTL+A+A A
Sbjct:   56 RRRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILD---------DGR------------VIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVA 234          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 61/120 (50.83%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  367 VVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            V++++S      +    L+DPD LKPG    +N+ S  I+D LP+ YD+++  ME+ E P E Y +IGGLE QI+E+ EA+ LP+T  + F+K+G+ PPKGVLLYGPPGTGKTL+ARA A
Sbjct:   89 VIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVA 208          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.279e-29
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  367 VVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            VV+++S      + V   V+P  LK G    +N+ S  I++ LPS YDS+V  ME+ + PTE Y DIGGLEKQI E+ EA+ LPMT  + F+K+G+ PPKGVLLYGPPGTGKTL+A+A A
Sbjct:   89 VVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAVA 208          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 79/220 (35.91%), Postives = 114/220 (51.82%), Query Frame = 1
Query:   79 NLEDDQLSSMTADDIV----RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            ++E+  +     DD V    R  R L+ ++R L+ + +R   EL                    P   GN++E+L                 D +R     +++        + +   ++ DKLKPG  V +++ +  I++ LPSE D  V   EV E+P   YNDIGGLEKQ+QEL EAI LP+ H E F+++G+ PPKGVLLYGPPG GKTLMA+A A
Sbjct:    2 SIENTDVHPEGYDDYVTFLKRRIRQLELQVRTLEADKERLERELSRLRMEMSRLRQP-------PAFAGNVIEVL-----------------DDER----AIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVA 193          
The following BLAST results are available for this feature:
BLAST of CN187740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PRS6A_YEAST7.984e-6857.3426S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS6A_DICDI3.034e-6759.4326S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS6A_SCHPO6.759e-6757.7526S protease regulatory subunit 6A OS=Schizosaccha... [more]
PRS6A_ENCCU8.320e-4144.2226S protease regulatory subunit 6A OS=Encephalitoz... [more]
PSMR_METJA5.775e-3438.46Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PSMR_AERPE7.805e-3138.66Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PSMR_METKA3.874e-3039.50Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_METMJ1.922e-2950.83Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_METHJ3.279e-2953.33Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_PYRKO1.627e-2835.91Proteasome-activating nucleotidase OS=Pyrococcus k... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187740 ID=CN187740; Name=CN187740; organism=Citrus sinensis; type=EST; length=728bp
AGGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTGAAAAAATAATCA
TATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGT
CTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGGCTACTCGACAAC
GAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAATCTTGAGTTAGA
TTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATA
AGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAAC
CCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCA
AAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCT
TTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGAT
CTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGACACACTGCCTTC
TGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTG
AAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTT
GAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTTCCAGAAGTTGGG
GGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTCCCGGTACTGGGA
AGACGTTGATGGCTCGTGCTTGTGCAGC
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