CN187740

Overview
NameCN187740
Unique NameCN187740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: ATAD2_HUMAN (ATPase family AAA domain-containing protein 2 OS=Homo sapiens GN=ATAD2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 1
Query:  427 PDKLKPGDLVGVNKDSYLI----LDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            P   +  +L G+ KD   I     D  P + DS V+           ++ +GGL   I  L E +V P+ + E F+K  ++PP+G L YGPPGTGKTL+ARA A
Sbjct:  389 PLNFRKDELKGIYKDRMKIGASLADVDPMQLDSSVR-----------FDSVGGLSNHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALA 481          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: SPAT5_HUMAN (Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  487 DTLPSEYDSRVKAME--VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D L +  D R  AM     + P   ++DIGGLE    +L +A+  P+ H E F ++G++PPKGVLLYGPPG  KT++A+A A
Sbjct:  601 DFLQAMNDIRPSAMREIAIDVPNVSWSDIGGLESIKLKLEQAVEWPLKHPESFIRMGIQPPKGVLLYGPPGCSKTMIAKALA 682          

HSP 2 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  511 SRVKAMEVDEKPTED-------YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            +RV   E+D+   E        Y+ IGGL  Q++ + E I LP+   E F+  G+  P+GVLLYGPPGTGKT++ARA A
Sbjct:  330 TRVNFTEIDKNSKEQDNQFKVTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGTGKTMIARAVA 408          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: YEJJ_SCHPO (Uncharacterized AAA domain-containing protein C31G5.19 OS=Schizosaccharomyces pombe GN=SPAC31G5.19 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  556 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            +  +GGL+  I +L E ++LP+ + E FQ+  ++PP+GVL +GPPGTGKTLMARA A
Sbjct:  265 FESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALA 321          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: YHI5_SCHPO (Uncharacterized AAA domain-containing protein P22H7.05c OS=Schizosaccharomyces pombe GN=SPBP22H7.05c PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  553 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D+N IGGLE  I +L E ++LP+ + E F  L + PP+GVL +GPPGTGKTLMAR  A
Sbjct:  370 DFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLA 427          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: SPAT5_MOUSE (Spermatogenesis-associated protein 5 OS=Mus musculus GN=Spata5 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  487 DTLPSEYDSRVKAME--VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D L    D R  AM     + P   ++DIGGLE    +L +A+  P+ H + F ++G++PPKGVLLYGPPG  KT++A+A A
Sbjct:  601 DFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALA 682          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  511 SRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            SR K   ++EKP   + D+ G+E +++E V+ I+  +    +FQKLG RPPKGVLLYG PG GKTL+A+A A
Sbjct:  140 SRAKVY-IEEKPKVTFKDVAGIE-EVKEEVKEIIEYLKDPVKFQKLGGRPPKGVLLYGEPGVGKTLLAKAIA 209          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: ATAD2_MOUSE (ATPase family AAA domain-containing protein 2 OS=Mus musculus GN=Atad2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 1
Query:  427 PDKLKPGDLVGVNKDSYLI----LDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            P   +  ++ G+ KD   I     D  P + D+ V+           ++ +GGL   I  L E +V P+ + E F+K  ++PP+G L YGPPGTGKTL+ARA A
Sbjct:   44 PLNFRKDEIRGIYKDRMKIGASLADVDPMQLDTSVR-----------FDSVGGLSSHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALA 136          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: ATD2B_HUMAN (ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  517 VKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            V  M +D+     ++ IGGL   I  L E +V P+ + E F+K  ++PP+G L YGPPGTGKTL+ARA A
Sbjct:  388 VDPMNIDKSVR--FDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALA 455          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: CDAT_PLAF7 (Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0047 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  490 TLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            TL  EY  R    E ++  T  Y D+GG++KQ+ ++ E I LP+ + E F  +G+  PKGVL++G PGTGKT +A+A A
Sbjct:  506 TLAEEYLKREDYEENNDDIT--YEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSIAKAIA 582          
The following BLAST results are available for this feature:
BLAST of CN187740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
ATAD2_HUMAN3.643e-1238.46ATPase family AAA domain-containing protein 2 OS=H... [more]
SPAT5_HUMAN4.757e-1245.12Spermatogenesis-associated protein 5 OS=Homo sapie... [more]
YEJJ_SCHPO6.213e-1252.63Uncharacterized AAA domain-containing protein C31G... [more]
YHI5_SCHPO8.115e-1256.90Uncharacterized AAA domain-containing protein P22H... [more]
SPAT5_MOUSE8.115e-1243.90Spermatogenesis-associated protein 5 OS=Mus muscul... [more]
FTSH_AQUAE1.808e-1150.00Cell division protease ftsH homolog OS=Aquifex aeo... [more]
ATAD2_MOUSE1.808e-1136.54ATPase family AAA domain-containing protein 2 OS=M... [more]
ATD2B_HUMAN4.027e-1147.14ATPase family AAA domain-containing protein 2B OS=... [more]
CDAT_PLAF76.869e-1144.30Putative cell division cycle ATPase OS=Plasmodium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187740 ID=CN187740; Name=CN187740; organism=Citrus sinensis; type=EST; length=728bp
AGGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTGAAAAAATAATCA
TATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGT
CTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGGCTACTCGACAAC
GAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAATCTTGAGTTAGA
TTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATA
AGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAAC
CCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCA
AAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCT
TTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGAT
CTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGACACACTGCCTTC
TGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTG
AAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTT
GAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTTCCAGAAGTTGGG
GGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTCCCGGTACTGGGA
AGACGTTGATGGCTCGTGCTTGTGCAGC
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