CN187740

Overview
NameCN187740
Unique NameCN187740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.077e-28
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  325 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            G  +D  ++RK    V+K+ST     + +   VDPD + PG  V +N+ +  I++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+ PPKGVLLYGPPGTGKTL+A+A A
Sbjct:   73 GTILDRVNERKA---VVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVA 203          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.378e-27
Identity = 73/197 (37.06%), Postives = 105/197 (53.30%), Query Frame = 1
Query:  136 RLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            R L+ ++R L+ + +R   EL                    P   G ++E+L+   ED A                  +++        + +   ++ + LKPG  V +++ +  I++ LPSE D  V   EV E+PT  YNDIGGL+KQ+QEL EAI LP+ H E F+K+G+ PPKGVLLYGPPG GKTLMA+A A
Sbjct:   26 RQLELQVRTLEADKERLERELSRLRMEMSRLRQP-------PAFAGTLIELLD---EDRA------------------IVQNYNGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKALA 194          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.350e-27
Identity = 61/134 (45.52%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  325 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            G  +D  ++RK    V+K+ST     + +   VDP+ + PG  V +N+ +  I++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+ PPKGVLLYGPPGTGKTL+A+A A
Sbjct:   73 GTILDKVNERKA---VVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVA 203          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.350e-27
Identity = 61/134 (45.52%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  325 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            G  +D  ++RK    V+K+ST     + +   VDP+ + PG  V +N+ +  I++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+ PPKGVLLYGPPGTGKTL+A+A A
Sbjct:   73 GTILDKVNERKA---VVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVA 203          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.350e-27
Identity = 61/134 (45.52%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  325 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            G  +D  ++RK    V+K+ST     + +   VDP+ + PG  V +N+ +  I++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+ PPKGVLLYGPPGTGKTL+A+A A
Sbjct:   73 GTILDRVNERKA---VVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVA 203          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.009e-27
Identity = 58/120 (48.33%), Postives = 82/120 (68.33%), Query Frame = 1
Query:  367 VVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            V +K++T     +     +D  +L+PG  V +N+ ++ I+D LPSE D  V  MEV+EKP   Y  IGGLE+Q++E+ E + LP+   E F+K+G+ PPKGVLLYGPPGTGKTL+A+A A
Sbjct:   87 VAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVA 206          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.235e-27
Identity = 70/194 (36.08%), Postives = 106/194 (54.64%), Query Frame = 1
Query:  145 DNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D  +R+L+E+++    EL+                   PY+   +++IL          DG             V++++S+   + + V   +D  KLKPG LV + +    I++ LP   D+ VK+ EV EKP   Y+DIGGL +QI E+ E I LP+ + E F+++G+ PPKGVLLYGPPGTGKTL+A+A A
Sbjct:   17 DPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDILP---------DGK------------VIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPKGVLLYGPPGTGKTLLAKAVA 189          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.166e-26
Identity = 71/200 (35.50%), Postives = 104/200 (52.00%), Query Frame = 1
Query:  127 RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            R  R L+ ++R L+ + +R   EL                    P   G ++E+L+   +D A                  +++        + +   ++ DKLKPG  V +++ +  I++ LP+E D  V   EV EKP   Y DIGGLE+Q+ EL EA+ LP+ H E F+K+G+ PPKGVLLYGPPG GKTLMA+A A
Sbjct:   22 RRIRQLELQVRTLEADKERLERELSRLRTEMSRLRQP-------PAFAGTVIEVLD---DDRA------------------IVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKAVA 193          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.166e-26
Identity = 69/236 (29.24%), Postives = 118/236 (50.00%), Query Frame = 1
Query:   52 MATAMVEDPNLEDD-----------QLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            MATAMV DP   +             + S   DD+    + L  ++  ++ + +    EL +                 +P ++G  +E+++ N                       ++ ++T    ++ ++  ++ + LKP   VG+++ S  ++D LP E DS +  +   EKP   YNDIGG + Q QE+ EA+ LP+TH E ++++G+ PP+GVLLYGPPGTGKT++A+A A
Sbjct:    1 MATAMVLDPKPAEKLPATRPETSITDVPSDGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNN---------------------AIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 215          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26
Identity = 73/212 (34.43%), Postives = 116/212 (54.72%), Query Frame = 1
Query:   91 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV PPKGVLLYGPPGTGKT++A+A A
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVA 189          
The following BLAST results are available for this feature:
BLAST of CN187740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PSMR_METM58.077e-2846.27Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_THEON1.378e-2737.06Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_METMP2.350e-2745.52Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM72.350e-2745.52Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM62.350e-2745.52Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METTH4.009e-2748.33Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_SULTO5.235e-2736.08Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PSMR_THEGJ1.166e-2635.50Proteasome-activating nucleotidase OS=Thermococcus... [more]
PRS6B_SOLTU1.166e-2629.2426S protease regulatory subunit 6B homolog OS=Sola... [more]
PSMR_SULIY1.523e-2634.43Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187740 ID=CN187740; Name=CN187740; organism=Citrus sinensis; type=EST; length=728bp
AGGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTGAAAAAATAATCA
TATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGT
CTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGGCTACTCGACAAC
GAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAATCTTGAGTTAGA
TTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATA
AGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAAC
CCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCA
AAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCT
TTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGAT
CTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGACACACTGCCTTC
TGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTG
AAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTT
GAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTTCCAGAAGTTGGG
GGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTCCCGGTACTGGGA
AGACGTTGATGGCTCGTGCTTGTGCAGC
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