CN187740

Overview
NameCN187740
Unique NameCN187740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26
Identity = 73/212 (34.43%), Postives = 116/212 (54.72%), Query Frame = 1
Query:   91 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV PPKGVLLYGPPGTGKT++A+A A
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVA 189          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26
Identity = 73/212 (34.43%), Postives = 116/212 (54.72%), Query Frame = 1
Query:   91 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV PPKGVLLYGPPGTGKT++A+A A
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVA 189          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26
Identity = 73/212 (34.43%), Postives = 116/212 (54.72%), Query Frame = 1
Query:   91 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV PPKGVLLYGPPGTGKT++A+A A
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVA 189          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26
Identity = 73/212 (34.43%), Postives = 116/212 (54.72%), Query Frame = 1
Query:   91 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV PPKGVLLYGPPGTGKT++A+A A
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVA 189          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26
Identity = 73/212 (34.43%), Postives = 116/212 (54.72%), Query Frame = 1
Query:   91 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV PPKGVLLYGPPGTGKT++A+A A
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVA 189          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26
Identity = 75/218 (34.40%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   85 EDDQLSSMTADDIV----RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            ED+       DD V    R  R L+ ++R+L+ + +R   EL                    P   G+++E+L+   +D A                  +++        + +   +D  KL+PG  V +++ +  I++ LP+  D  V   EV E+P   YNDIGGL+KQ+QEL EAI LP+ H E F+++G+ PPKGVLLYGPPG GKTLMA+A A
Sbjct:    3 EDEAQFHGNYDDYVTYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQP-------PAFAGSVIEVLD---DDRA------------------IVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIA 192          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26
Identity = 71/200 (35.50%), Postives = 106/200 (53.00%), Query Frame = 1
Query:  127 RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            R  R L+ ++R+L+ + +R   EL                    P   G ++E+L+   +D A                  +++        + +   ++ DKL+PG  V +++ +  I++ LPS  D  V   EV E+P   YNDIGGL+KQ+QEL EAI LP+ H E F+++G+ PPKGVLLYGPPG GKTLMA+A A
Sbjct:   24 RRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQP-------PAFAGTVIEVLD---DDRA------------------IVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALA 195          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  325 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            G  +D  ++RK    V+K+ST     + +   V+PD + PG  V +N+ +  +++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+ PPKGVLLYGPPGTGKTL+A+A A
Sbjct:   73 GTVLDRVNERKA---VVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVA 203          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.598e-26
Identity = 56/120 (46.67%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  367 VVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            V++++S      + +   ++ +++KPG    +N+ S  I++ LP+ YD+++  MEV E P+E Y +IGGLEKQI E+ EA+ LP+   E F+K+G+ PPKGVLL+GPPGTGKTL+ARA A
Sbjct:   89 VIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGKTLLARAVA 208          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26
Identity = 71/212 (33.49%), Postives = 117/212 (55.19%), Query Frame = 1
Query:   91 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + +   +D   +KPG  V +N+    IL+ LP + D  VK ME+ E+P   Y++IGGLE+QI+EL E + LP+ + E F+++GV PPKGVLLYGPPGTGKT++A+A A
Sbjct:    6 DTIRDASSPDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVA 189          
The following BLAST results are available for this feature:
BLAST of CN187740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PSMR_SULIN1.523e-2634.43Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM1.523e-2634.43Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL1.523e-2634.43Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK1.523e-2634.43Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA1.523e-2634.43Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_PYRFU1.523e-2634.40Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_PYRAB1.523e-2635.50Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_METVS1.523e-2644.78Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METPE2.598e-2646.67Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_SULSO3.394e-2633.49Proteasome-activating nucleotidase OS=Sulfolobus s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187740 ID=CN187740; Name=CN187740; organism=Citrus sinensis; type=EST; length=728bp
AGGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTGAAAAAATAATCA
TATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGT
CTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGGCTACTCGACAAC
GAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAATCTTGAGTTAGA
TTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATA
AGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAAC
CCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCA
AAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCT
TTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGAT
CTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGACACACTGCCTTC
TGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTG
AAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTT
GAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTTCCAGAAGTTGGG
GGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTCCCGGTACTGGGA
AGACGTTGATGGCTCGTGCTTGTGCAGC
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