CN187740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26 Identity = 70/200 (35.00%), Postives = 105/200 (52.50%), Query Frame = 1 Query: 127 RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 R R L+ ++R+L+ + +R EL P G ++E+L+ ED A +++ + + +D KL+PG V +++ + +++ LP+ D V EV E+P YNDIGGL+KQ+QEL EAI LP+ H E F+++G+ PPKGVLLYGPPG GKTLMA+A A Sbjct: 24 RRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQP-------PAFAGTVIEVLD---EDRA------------------IVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALA 195
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26 Identity = 60/156 (38.46%), Postives = 93/156 (59.62%), Query Frame = 1 Query: 259 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 P ++G +V++++ N V++++S + V+PD +KPG +N+ S I++ LPS +D++V ME+ + P E Y DIGGL++QI E+ EA+ LP+ E F ++G+ PPKGVLLYGPPGTGKTL+A+A A Sbjct: 99 PLIIGTVVDVVDANR---------------------VIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVA 233
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26 Identity = 57/157 (36.31%), Postives = 97/157 (61.78%), Query Frame = 1 Query: 256 LPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 +P L+G ++E+++ N ++++++ T+ + ++ +D + LKP V + + S ++DTLP E DS + + DEKP+E Y+DIGG + Q QE+ EA+ LP+TH ++++G+ PP+GVLLYGPPGTGKT++A+A A Sbjct: 70 VPLLIGQLLEMVDSNTG---------------------IVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 205
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26 Identity = 54/119 (45.38%), Postives = 84/119 (70.59%), Query Frame = 1 Query: 370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 ++ ++T ++ V+ ++D + LKPG V ++K S ++D LP E DS ++ + DEKP Y DIGGL+ Q QE+ EA+ LP+TH E +Q++G+ PP+GVL+YGPPG GKT++A+A A Sbjct: 98 IVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVA 216
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26 Identity = 60/157 (38.22%), Postives = 96/157 (61.15%), Query Frame = 1 Query: 292 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 +M P E++ EE+ + +D L+ ++ TS ++ ++ VD D L+PG V +N + ++ L + D V M+V++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKTL+A+A A Sbjct: 84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26 Identity = 60/157 (38.22%), Postives = 96/157 (61.15%), Query Frame = 1 Query: 292 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 +M P E++ EE+ + +D L+ ++ TS ++ ++ VD D L+PG V +N + ++ L + D V M+V++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKTL+A+A A Sbjct: 84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26 Identity = 60/157 (38.22%), Postives = 96/157 (61.15%), Query Frame = 1 Query: 292 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 +M P E++ EE+ + +D L+ ++ TS ++ ++ VD D L+PG V +N + ++ L + D V M+V++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKTL+A+A A Sbjct: 84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26 Identity = 59/156 (37.82%), Postives = 96/156 (61.54%), Query Frame = 1 Query: 295 MNPEDEA-EEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 + P+DE EE+ + +D L+ ++ TS ++ ++ VD D+L+PG V +N + ++ L + D V M++++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKTL+A+A A Sbjct: 84 LKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 239
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26 Identity = 66/156 (42.31%), Postives = 92/156 (58.97%), Query Frame = 1 Query: 259 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 P LVG + +ILE DG VV+K+ST + ++ ++LKPG V +N+ + I++ LP+ D V EV+EKP Y DIGGL+ QI+E+ EA+ LP+ E F ++G+ PPKGVLLYGPPGTGKTL+A+A A Sbjct: 62 PLLVGVVSDILE---------DGR------------VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVA 196
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.874e-26 Identity = 59/152 (38.82%), Postives = 92/152 (60.53%), Query Frame = 1 Query: 304 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 E++AEED + +D L+ ++ +S ++ ++ VD D+L+PG + ++ ++ L E D V M+V++ P E Y DIGGLE QIQE+ EA+ LP+TH E ++ +G++PPKGV+LYG PGTGKTL+A+A A Sbjct: 92 EEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVA 243 The following BLAST results are available for this feature:
BLAST of CN187740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 159
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187740 ID=CN187740; Name=CN187740; organism=Citrus sinensis; type=EST; length=728bpback to top |