CN187740

Overview
NameCN187740
Unique NameCN187740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 70/200 (35.00%), Postives = 105/200 (52.50%), Query Frame = 1
Query:  127 RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            R  R L+ ++R+L+ + +R   EL                    P   G ++E+L+   ED A                  +++        + +   +D  KL+PG  V +++ +  +++ LP+  D  V   EV E+P   YNDIGGL+KQ+QEL EAI LP+ H E F+++G+ PPKGVLLYGPPG GKTLMA+A A
Sbjct:   24 RRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQP-------PAFAGTVIEVLD---EDRA------------------IVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALA 195          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 60/156 (38.46%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  259 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            P ++G +V++++ N                      V++++S      +     V+PD +KPG    +N+ S  I++ LPS +D++V  ME+ + P E Y DIGGL++QI E+ EA+ LP+   E F ++G+ PPKGVLLYGPPGTGKTL+A+A A
Sbjct:   99 PLIIGTVVDVVDANR---------------------VIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVA 233          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 57/157 (36.31%), Postives = 97/157 (61.78%), Query Frame = 1
Query:  256 LPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            +P L+G ++E+++ N                       ++++++  T+ + ++  +D + LKP   V + + S  ++DTLP E DS +  +  DEKP+E Y+DIGG + Q QE+ EA+ LP+TH   ++++G+ PP+GVLLYGPPGTGKT++A+A A
Sbjct:   70 VPLLIGQLLEMVDSNTG---------------------IVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 205          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 54/119 (45.38%), Postives = 84/119 (70.59%), Query Frame = 1
Query:  370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            ++ ++T    ++ V+ ++D + LKPG  V ++K S  ++D LP E DS ++ +  DEKP   Y DIGGL+ Q QE+ EA+ LP+TH E +Q++G+ PP+GVL+YGPPG GKT++A+A A
Sbjct:   98 IVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVA 216          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26
Identity = 60/157 (38.22%), Postives = 96/157 (61.15%), Query Frame = 1
Query:  292 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            +M P E++ EE+ + +D           L+        ++ TS     ++ ++  VD D L+PG  V +N   + ++  L  + D  V  M+V++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKTL+A+A A
Sbjct:   84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26
Identity = 60/157 (38.22%), Postives = 96/157 (61.15%), Query Frame = 1
Query:  292 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            +M P E++ EE+ + +D           L+        ++ TS     ++ ++  VD D L+PG  V +N   + ++  L  + D  V  M+V++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKTL+A+A A
Sbjct:   84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26
Identity = 60/157 (38.22%), Postives = 96/157 (61.15%), Query Frame = 1
Query:  292 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            +M P E++ EE+ + +D           L+        ++ TS     ++ ++  VD D L+PG  V +N   + ++  L  + D  V  M+V++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKTL+A+A A
Sbjct:   84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26
Identity = 59/156 (37.82%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  295 MNPEDEA-EEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            + P+DE  EE+ + +D           L+        ++ TS     ++ ++  VD D+L+PG  V +N   + ++  L  + D  V  M++++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKTL+A+A A
Sbjct:   84 LKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 239          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26
Identity = 66/156 (42.31%), Postives = 92/156 (58.97%), Query Frame = 1
Query:  259 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            P LVG + +ILE         DG             VV+K+ST     +     ++ ++LKPG  V +N+ +  I++ LP+  D  V   EV+EKP   Y DIGGL+ QI+E+ EA+ LP+   E F ++G+ PPKGVLLYGPPGTGKTL+A+A A
Sbjct:   62 PLLVGVVSDILE---------DGR------------VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVA 196          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.874e-26
Identity = 59/152 (38.82%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  304 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            E++AEED + +D           L+        ++ +S     ++ ++  VD D+L+PG  + ++     ++  L  E D  V  M+V++ P E Y DIGGLE QIQE+ EA+ LP+TH E ++ +G++PPKGV+LYG PGTGKTL+A+A A
Sbjct:   92 EEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVA 243          
The following BLAST results are available for this feature:
BLAST of CN187740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PSMR_PYRHO4.432e-2635.00Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_METB64.432e-2638.46Proteasome-activating nucleotidase OS=Methanoregul... [more]
PRS6B_DICDI4.432e-2636.3126S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6B_CAEEL4.432e-2645.38Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS4_RAT5.788e-2638.2226S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE5.788e-2638.2226S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN5.788e-2638.2226S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_DROME5.788e-2637.8226S protease regulatory subunit 4 OS=Drosophila me... [more]
PSMR_ARCFU7.560e-2642.31Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PRS4B_ARATH9.874e-2638.8226S proteasome regulatory subunit 4 homolog B OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187740 ID=CN187740; Name=CN187740; organism=Citrus sinensis; type=EST; length=728bp
AGGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTGAAAAAATAATCA
TATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGT
CTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGGCTACTCGACAAC
GAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAATCTTGAGTTAGA
TTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATA
AGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAAC
CCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCA
AAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCT
TTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGAT
CTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGACACACTGCCTTC
TGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTG
AAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTT
GAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTTCCAGAAGTTGGG
GGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTCCCGGTACTGGGA
AGACGTTGATGGCTCGTGCTTGTGCAGC
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