CN187740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.874e-26 Identity = 59/152 (38.82%), Postives = 92/152 (60.53%), Query Frame = 1 Query: 304 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 E++AEED + +D L+ ++ +S ++ ++ VD D+L+PG + ++ ++ L E D V M+V++ P E Y DIGGLE QIQE+ EA+ LP+TH E ++ +G++PPKGV+LYG PGTGKTL+A+A A Sbjct: 92 EEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVA 243
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25 Identity = 59/152 (38.82%), Postives = 91/152 (59.87%), Query Frame = 1 Query: 304 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 ED+ EED + +D L+ ++ +S ++ ++ VD D+L+PG + ++ ++ L E D V M+V++ P E Y DIGGL+ QIQE+ EA+ LP+TH E ++ +G+RPPKGV+LYG PGTGKTL+A+A A Sbjct: 97 EDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVA 248
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25 Identity = 59/157 (37.58%), Postives = 96/157 (61.15%), Query Frame = 1 Query: 292 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 +M P E++ EE+ + +D L+ ++ TS ++ ++ VD D L+PG V +N + ++ L + D V M++++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKTL+A+A A Sbjct: 84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.684e-25 Identity = 50/119 (42.02%), Postives = 82/119 (68.91%), Query Frame = 1 Query: 370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 ++ ++T ++ ++ +D + LKP V ++K S ++D LP E DS + ++ DEKP Y+DIGG++ Q QE+ EA+ LP+TH E ++++G+ PP+GVL+YGPPG GKT++A A A Sbjct: 99 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVA 217
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3) HSP 1 Score: 115.931 bits (289), Expect = 2.200e-25 Identity = 52/119 (43.70%), Postives = 83/119 (69.75%), Query Frame = 1 Query: 370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 ++ + T ++ ++ VD + L+PG V ++ + I+ L + D V M++D+ PTE Y+DIGGLE QIQE+ E++ LP+TH E ++++G++PPKGV+LYG PGTGKTL+A+A A Sbjct: 119 IVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA 237
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.200e-25 Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 1 Query: 304 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 E+ EE+ A +D L+ + ++ T+ ++ ++ VD ++L+PG V +N ++ ++ L + D V M++++ P E Y D+GGL++QIQE+ EA+ LP+TH E ++++G+RPPKGV+LYG PGTGKTL+A+A A Sbjct: 92 EERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVA 243
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.752e-25 Identity = 59/156 (37.82%), Postives = 91/156 (58.33%), Query Frame = 1 Query: 259 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 P VGN+ EI++ N ++ ++ ++ ++ VD KL G V +N + ++ + E D V M+V++ PTE Y+DIGGLE Q+QE+ EAI LP+TH E ++++G++PPKGV+LYG PGTGKTL+A+A A Sbjct: 105 PLTVGNLEEIIDDNH---------------------AIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVA 239
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.900e-25 Identity = 67/197 (34.01%), Postives = 103/197 (52.28%), Query Frame = 1 Query: 136 RLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 R L+N+ + E+++ ELD P ++G +++++ K +++++S + V +D KL PG V +N+ + I + +PS + V AMEV E DY+ IGGL++QIQEL EA+ LP+T ERF ++G+ PPKGVLLYG PGTGKTL+A+A A Sbjct: 53 RYLENQKIKYEREIRKLQSELDRMKTS--------------PLIIGTVIDVI---------------------KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVA 214
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25 Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 340 LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 LD GK +++K+ST + ++ ++ PG V +N+ S +++ LP+ D V MEV + P DY IGGLE QI EL E + LP+ E FQK+G+ PPKGVLLYGPPGTGKTL+A+A A Sbjct: 87 LDVMANGK-MIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPKGVLLYGPPGTGKTLLAKAVA 214
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25 Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 1 Query: 409 VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 VVGL V P ++ G VGV+++ Y I LP + D V M V+EKP YND+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKTL+ARA A Sbjct: 115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 223 The following BLAST results are available for this feature:
BLAST of CN187740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 159
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187740 ID=CN187740; Name=CN187740; organism=Citrus sinensis; type=EST; length=728bpback to top |