CN187740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23 Identity = 49/119 (41.18%), Postives = 81/119 (68.07%), Query Frame = 1 Query: 370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 ++ ++T ++ ++ +D + LKP V ++K S ++D LP E DS + + D+KP Y DIGG++ Q QE+ EA+ LP+TH E ++++G+ PP+GVL+YGPPG GKT++A+A A Sbjct: 102 IVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVA 220
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23 Identity = 49/119 (41.18%), Postives = 81/119 (68.07%), Query Frame = 1 Query: 370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 ++ ++T ++ ++ +D + LKP V ++K S ++D LP E DS + + D+KP Y DIGG++ Q QE+ EA+ LP+TH E ++++G+ PP+GVL+YGPPG GKT++A+A A Sbjct: 102 IVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVA 220
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23 Identity = 49/119 (41.18%), Postives = 81/119 (68.07%), Query Frame = 1 Query: 370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 ++ ++T ++ ++ +D + LKP V ++K S ++D LP E DS + + D+KP Y DIGG++ Q QE+ EA+ LP+TH E ++++G+ PP+GVL+YGPPG GKT++A+A A Sbjct: 102 IVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVA 220
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23 Identity = 49/119 (41.18%), Postives = 81/119 (68.07%), Query Frame = 1 Query: 370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 ++ ++T ++ ++ +D + LKP V ++K S ++D LP E DS + + D+KP Y DIGG++ Q QE+ EA+ LP+TH E ++++G+ PP+GVL+YGPPG GKT++A+A A Sbjct: 102 IVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVA 220
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23 Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 1 Query: 430 DKLKPGDL-----VGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 DKL P D+ VGV+++ Y I LP + D+ V M+V+EKP Y D+GG ++QI++L E + +P+ H E+F LG+ PPKGVL+YGPPGTGKTL ARA A Sbjct: 122 DKLSPTDVEEGIRVGVDRNKYQIQIPLPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGVLMYGPPGTGKTLCARAVA 225
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.586e-23 Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 1 Query: 409 VVGLVD---PDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 VV L D P ++ G VGV+++ Y I LP++ D V M+V+EKP Y+D+GG + QI++L E + P+ H ER+ LG+ PPKGVLLYGPPGTGKTL ARA A Sbjct: 124 VVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVA 232
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23 Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 1 Query: 421 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 +D KL P V + DSY++ LPS+ D V M+V++ P Y+ IGGL++QI+E+ E I LP+ H E F+ LG+ PKGVLLYGPPGTGKTL+ARA A Sbjct: 115 IDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 216
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23 Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1 Query: 421 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 V P ++ G VGV+++ Y I LP + D V M+V+EKP Y+D+GG ++QI++L E + P+ H ERF LG+ PPKGVLL+GPPGTGKTL ARA A Sbjct: 129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVA 230
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3) HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23 Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1 Query: 421 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 V P ++ G VGV+++ Y I LP + D V M+V+EKP Y+D+GG ++QI++L E + P+ H ERF LG+ PPKGVLL+GPPGTGKTL ARA A Sbjct: 129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVA 230
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3) HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23 Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1 Query: 421 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 V P ++ G VGV+++ Y I LP + D V M+V+EKP Y+D+GG ++QI++L E + P+ H ERF LG+ PPKGVLL+GPPGTGKTL ARA A Sbjct: 129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVA 230 The following BLAST results are available for this feature:
BLAST of CN187740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 159
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN187740 ID=CN187740; Name=CN187740; organism=Citrus sinensis; type=EST; length=728bpback to top |