CN187740

Overview
NameCN187740
Unique NameCN187740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  421 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            V P  ++ G  VGV+++ Y I   LP + D  V  M+V+EKP   Y+D+GG ++QI++L E +  P+ H ERF  LG+ PPKGVLL+GPPGTGKTL ARA A
Sbjct:  129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVA 230          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  421 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            V P  ++ G  VGV+++ Y I   LP + D  V  M+V+EKP   Y+D+GG ++QI++L E +  P+ H ERF  LG+ PPKGVLL+GPPGTGKTL ARA A
Sbjct:  129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVA 230          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  421 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            V P  ++ G  VGV+++ Y I   LP + D  V  M+V+EKP   Y+D+GG ++QI++L E +  P+ H ERF  LG+ PPKGVLL+GPPGTGKTL ARA A
Sbjct:  129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVA 230          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  421 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            V P  ++ G  VGV+++ Y I   LP + D  V  M+V+EKP   Y+D+GG ++QI++L E +  P+ H ERF  LG+ PPKGVLL+GPPGTGKTL ARA A
Sbjct:  129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVA 230          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 49/119 (41.18%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            ++ ++T    ++ +V  +D + LKP   V ++K S  ++D LP   DS +  +  D+KP   Y DIGG++ Q QE+ EA+ LP+TH E ++++G+ PP+GVL+YGPPG GKT++A+A A
Sbjct:  102 IVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVA 220          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 1
Query:  421 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            +D  ++KP   V +  DSY ++  LP++ D  V  M V++ P   Y  +GGLEKQI+E+ E I LP+ H E F+ LG+  PKG+LLYGPPGTGKTL+ARA A
Sbjct:   99 IDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVA 200          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  421 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            +D  K+ P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKTL+ARA A
Sbjct:  115 IDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 216          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  421 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            V P  ++ G  VG +++ Y I   LP + D  V  M+V+EKP   Y D+GG ++QI+ L E + LP+   ERF KLG+ PPKG++LYGPPGTGKTL ARA A
Sbjct:  133 VSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVA 234          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  409 VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            VVGL   V P  ++ G  VGV++  Y I   LP   D  V  M V+EKP   Y+D+GG + QI++L E + LP+   ERF  LG+ PPKG+LLYGPPGTGKTL ARA A
Sbjct:  156 VVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVA 264          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22
Identity = 51/99 (51.52%), Postives = 71/99 (71.72%), Query Frame = 1
Query:  430 DKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            D L+ GD V +N DS+ +   L  E D+R +AMEVDE P+  Y DIGGL+ Q++E+ EA+  P+ + E+F  +GV PP GVLL+GPPGTGKT++A+A A
Sbjct:  110 DTLEVGDRVAIN-DSFSVQRVLDDETDARAQAMEVDESPSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGVEPPSGVLLHGPPGTGKTMLAKAVA 207          
The following BLAST results are available for this feature:
BLAST of CN187740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PRS7_MOUSE5.990e-2350.9826S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA5.990e-2350.9826S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN5.990e-2350.9826S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN5.990e-2350.9826S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PRS6B_MOUSE7.823e-2341.1826S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS8_SCHPO1.022e-2250.0026S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS8A_ARATH1.022e-2250.9826S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS7_SCHPO1.743e-2250.0026S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS7_YEAST2.973e-2251.3826S protease regulatory subunit 7 homolog OS=Sacch... [more]
PSMR1_HALSA3.883e-2251.52Proteasome-activating nucleotidase 1 OS=Halobacter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187740 ID=CN187740; Name=CN187740; organism=Citrus sinensis; type=EST; length=728bp
AGGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTGAAAAAATAATCA
TATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGT
CTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGGCTACTCGACAAC
GAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAATCTTGAGTTAGA
TTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATA
AGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAAC
CCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCA
AAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCT
TTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGAT
CTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGACACACTGCCTTC
TGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTG
AAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTT
GAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTTCCAGAAGTTGGG
GGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTCCCGGTACTGGGA
AGACGTTGATGGCTCGTGCTTGTGCAGC
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