CN187740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22 Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 367 VVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 V++K + + + VD KL P + +SY + LP++ D V M+V++ P Y+ +GGL+KQI+E+ E I LP+ H E F+ LG+ PKGVLLYGPPGTGKTL+ARA A Sbjct: 81 VLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 200
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22 Identity = 47/119 (39.50%), Postives = 78/119 (65.55%), Query Frame = 1 Query: 370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 ++ ++T + ++ +D + LKP V + + S ++D LP E DS + + DE+P Y D+GGL+ Q QE+ EA+ LP+T + ++++G+ PP+GVLLYGPPGTGKT++ +A A Sbjct: 71 IVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVA 189
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22 Identity = 55/122 (45.08%), Postives = 74/122 (60.66%), Query Frame = 1 Query: 361 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 K V++K + V +D + + P V + DSY + LP++ D V M V++ P Y IGGL+KQI+E+ E I LP+ H E F+ LG+ PKGVLLYGPPGTGKTL+ARA A Sbjct: 78 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVA 199
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22 Identity = 52/122 (42.62%), Postives = 76/122 (62.30%), Query Frame = 1 Query: 361 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 K V++K S + + ++ L PG V + DSY + LP++ D V M+V++ P Y +GGL++QI+E+ E I LP+ H E F+ LG+ PKGV++YGPPGTGKTL+ARA A Sbjct: 90 KKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVA 211
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22 Identity = 46/119 (38.66%), Postives = 79/119 (66.39%), Query Frame = 1 Query: 370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 ++ ++T + + ++ +D + LKP V +++ S ++D LP + DS + M +EKP Y D+GGL+ Q QE+ EA+ LP+ + ++++G+ PP+GVLLYGPPGTGKT++ +A A Sbjct: 109 IVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22 Identity = 68/165 (41.21%), Postives = 94/165 (56.97%), Query Frame = 1 Query: 271 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 G + E+ E E + + + DL + Q G+ V VLK T + + VVG +D KLKPG V ++ + I+ LP E D V M ++ Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKTL+ARA A Sbjct: 24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVA 188
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22 Identity = 68/165 (41.21%), Postives = 94/165 (56.97%), Query Frame = 1 Query: 271 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 G + E+ E E + + + DL + Q G+ V VLK T + + VVG +D KLKPG V ++ + I+ LP E D V M ++ Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKTL+ARA A Sbjct: 24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVA 188
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22 Identity = 68/165 (41.21%), Postives = 94/165 (56.97%), Query Frame = 1 Query: 271 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 G + E+ E E + + + DL + Q G+ V VLK T + + VVG +D KLKPG V ++ + I+ LP E D V M ++ Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKTL+ARA A Sbjct: 24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVA 188
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22 Identity = 68/165 (41.21%), Postives = 94/165 (56.97%), Query Frame = 1 Query: 271 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 G + E+ E E + + + DL + Q G+ V VLK T + + VVG +D KLKPG V ++ + I+ LP E D V M ++ Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKTL+ARA A Sbjct: 24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVA 188
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22 Identity = 55/122 (45.08%), Postives = 74/122 (60.66%), Query Frame = 1 Query: 361 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726 K V++K + V +D + + P V + DSY + LP++ D V M V++ P Y IGGL+KQI+E+ E I LP+ H E F+ LG+ PKGVLLYGPPGTGKTL+ARA A Sbjct: 83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 204 The following BLAST results are available for this feature:
BLAST of CN187740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 159
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187740 ID=CN187740; Name=CN187740; organism=Citrus sinensis; type=EST; length=728bpback to top |