CN187740

Overview
NameCN187740
Unique NameCN187740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22
Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  367 VVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            V++K +      + +   VD  KL P     +  +SY +   LP++ D  V  M+V++ P   Y+ +GGL+KQI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKTL+ARA A
Sbjct:   81 VLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 200          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22
Identity = 47/119 (39.50%), Postives = 78/119 (65.55%), Query Frame = 1
Query:  370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            ++ ++T     + ++  +D + LKP   V + + S  ++D LP E DS +  +  DE+P   Y D+GGL+ Q QE+ EA+ LP+T  + ++++G+ PP+GVLLYGPPGTGKT++ +A A
Sbjct:   71 IVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVA 189          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22
Identity = 55/122 (45.08%), Postives = 74/122 (60.66%), Query Frame = 1
Query:  361 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            K V++K        + V   +D + + P   V +  DSY +   LP++ D  V  M V++ P   Y  IGGL+KQI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKTL+ARA A
Sbjct:   78 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVA 199          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22
Identity = 52/122 (42.62%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  361 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            K V++K S      + +   ++   L PG  V +  DSY +   LP++ D  V  M+V++ P   Y  +GGL++QI+E+ E I LP+ H E F+ LG+  PKGV++YGPPGTGKTL+ARA A
Sbjct:   90 KKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVA 211          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 46/119 (38.66%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  370 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            ++ ++T  +  + ++  +D + LKP   V +++ S  ++D LP + DS +  M  +EKP   Y D+GGL+ Q QE+ EA+ LP+   + ++++G+ PP+GVLLYGPPGTGKT++ +A A
Sbjct:  109 IVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 68/165 (41.21%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  271 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            G + E+ E   E   + + +  DL + Q  G+ V  VLK  T +   +        VVG    +D  KLKPG  V ++  +  I+  LP E D  V  M  ++     Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKTL+ARA A
Sbjct:   24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVA 188          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 68/165 (41.21%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  271 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            G + E+ E   E   + + +  DL + Q  G+ V  VLK  T +   +        VVG    +D  KLKPG  V ++  +  I+  LP E D  V  M  ++     Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKTL+ARA A
Sbjct:   24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVA 188          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 68/165 (41.21%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  271 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            G + E+ E   E   + + +  DL + Q  G+ V  VLK  T +   +        VVG    +D  KLKPG  V ++  +  I+  LP E D  V  M  ++     Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKTL+ARA A
Sbjct:   24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVA 188          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 68/165 (41.21%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  271 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            G + E+ E   E   + + +  DL + Q  G+ V  VLK  T +   +        VVG    +D  KLKPG  V ++  +  I+  LP E D  V  M  ++     Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKTL+ARA A
Sbjct:   24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVA 188          
BLAST of CN187740 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 55/122 (45.08%), Postives = 74/122 (60.66%), Query Frame = 1
Query:  361 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 726
            K V++K        + V   +D + + P   V +  DSY +   LP++ D  V  M V++ P   Y  IGGL+KQI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKTL+ARA A
Sbjct:   83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 204          
The following BLAST results are available for this feature:
BLAST of CN187740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PRS8_DICDI3.883e-2244.1726S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS6B_SCHPO3.883e-2239.5026S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS8_XENLA5.071e-2245.0826S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS8_NAEFO5.071e-2242.6226S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS6B_YEAST6.623e-2238.6626S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS10_SPETR6.623e-2241.2126S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE6.623e-2241.2126S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN6.623e-2241.2126S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN6.623e-2241.2126S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS8_RAT8.650e-2245.0826S protease regulatory subunit 8 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187740 ID=CN187740; Name=CN187740; organism=Citrus sinensis; type=EST; length=728bp
AGGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTGAAAAAATAATCA
TATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGT
CTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGGCTACTCGACAAC
GAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAATCTTGAGTTAGA
TTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATA
AGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAAC
CCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCA
AAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCT
TTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGAT
CTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGACACACTGCCTTC
TGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTG
AAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTT
GAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTTCCAGAAGTTGGG
GGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTCCCGGTACTGGGA
AGACGTTGATGGCTCGTGCTTGTGCAGC
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