CN187738

Overview
NameCN187738
Unique NameCN187738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN187738_ssr55 microsatellite CN187738_ssr55:55..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:17..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KCY_MOUSE (UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.160e-44
Identity = 96/184 (52.17%), Postives = 126/184 (68.48%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 728
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +LES+ P++  YE  GKV+KIDA+K V EVF  V  +F
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVDEVFGEVVKIF 192          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KCY_RAT (UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 5.390e-44
Identity = 96/184 (52.17%), Postives = 126/184 (68.48%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 728
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +LES+ P++  YE  GKV+KIDA+K V EVF  V  +F
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIDRCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVDEVFGDVMKIF 192          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: UMPK_YEAST (Uridylate kinase OS=Saccharomyces cerevisiae GN=URA6 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.606e-42
Identity = 86/177 (48.59%), Postives = 125/177 (70.62%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 719
            LGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG+IVP E+T+ LL+ A+ ++      KFLIDGFPR  +   +FE    +E +F+LFFDC E+ M  R+L R +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV ++   + V +V+  V+
Sbjct:   22 LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQ 197          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD1_CAEEL (Probable adenylate kinase isoenzyme F38B2.4 OS=Caenorhabditis elegans GN=F38B2.4 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.905e-39
Identity = 86/177 (48.59%), Postives = 119/177 (67.23%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM---EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 722
            +GGPGSGKGTQC  IV  +G THLS+GDLLR E+KSGS  G  +  +++ G +VP EV + L+++AM    E G+  FLIDG+PR       FE+  + E + VLFFD +EE + +R+L+R Q  GR DDN +TI+KR   F+ S+ PVV YYE+KGK+ +I+A   V ++F  V A
Sbjct:   26 VGGPGSGKGTQCDKIVAKYGLTHLSSGDLLRDEVKSGSPRGAQLTAIMESGALVPLEVVLDLVKEAMLKAIEKGSKGFLIDGYPREVAQGQQFESEIQ-EAKLVLFFDVAEETLVKRLLHRAQTSGRADDNADTIKKRLHTFVTSTAPVVDYYESKGKLVRINAEGSVDDIFAVVVA 201          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD1_CYPCA (Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN=ak1 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.679e-37
Identity = 84/179 (46.93%), Postives = 121/179 (67.60%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFD-AVKAV 725
            +GGPGSGKGTQC  IVE +GYTHLS+GDLLRAE+ SGSE G  +Q ++++G++VP +  + +++ AM  +   +  +LIDG+PR  +    FE   KI  P  +L+ D   E M +R++ R Q  GR DDN ETI+KR  ++ +++ PV+ YYE +G VRKI++  PV EVF   VKA+
Sbjct:   14 VGGPGSGKGTQCEKIVEKYGYTHLSSGDLLRAEVASGSERGKQLQAIMQKGELVPLDTVLDMIKDAMIAKADVSKGYLIDGYPREVKQGEEFE--KKIGAPALLLYIDAKAETMVQRLMKRGQTSGRSDDNEETIKKRLDLYYKATEPVIAYYETRGIVRKINSELPVDEVFAIVVKAI 190          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD1_RAT (Adenylate kinase isoenzyme 1 OS=Rattus norvegicus GN=Ak1 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.425e-36
Identity = 77/174 (44.25%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 716
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+ +++++G++VP E  + +L+ AM  +   ++ FLIDG+PR  +    FE     +P  +L+ D   E M +R+L R +  GR DDN ETI+KR + + +++ PV+ +Y+ +G VRK++A   V  VF  V
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSSRGKMLSSIMEKGELVPLETVLDMLRDAMLAKVDSSNGFLIDGYPREVKQGEEFERKI-AQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVISFYDKRGIVRKVNAEGSVDTVFSQV 186          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD1_PIG (Adenylate kinase isoenzyme 1 OS=Sus scrofa GN=AK1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.425e-36
Identity = 80/175 (45.71%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 716
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G++VP E  + +L+ AM  +   +  FLIDG+PR  +    FE   KI +P  +L+ D   E M +R+L R +  GR DDN ETI+KR + + +++ PV+ +YE +G VRK++A   V +VF  V
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFE--RKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQV 186          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD1_BOVIN (Adenylate kinase isoenzyme 1 OS=Bos taurus GN=AK1 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 4.137e-36
Identity = 78/174 (44.83%), Postives = 113/174 (64.94%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 716
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G++VP E  + +L+ AM  +   +  FLIDG+PR  +    FE     +P  +L+ D   E M +R+L R +  GR DDN ETI+KR + + +++ PV+ +YE +G VRK++A   V  VF  V
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVQQGEEFER-RIAQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDNVFSQV 186          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: UMPK_SCHPO (Probable uridylate kinase OS=Schizosaccharomyces pombe GN=SPCC1795.05c PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.056e-36
Identity = 84/181 (46.41%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF-DAVKAV 725
            LGGPG+GKGTQC  + E F  + H+SAGD LR E  + GS+ G +I+  IK+GKIVP E+TI LL+  M+E    G DKFLIDGFPR  +    FE  +    +F L+F C +E M +R+++R +  GR DDN+E+I+KRF  + ++S+PVV+Y +++ ++  IDA +    VF D VKA+
Sbjct:    8 LGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIVPMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEK-SVCPAKFALYFRCGQETMLKRLIHRGKTSGRSDDNIESIKKRFVTYTKASMPVVEYLKSQNRLITIDAEQDPDAVFEDTVKAL 187          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD1_RABIT (Adenylate kinase isoenzyme 1 OS=Oryctolagus cuniculus GN=AK1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.216e-36
Identity = 77/174 (44.25%), Postives = 111/174 (63.79%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 716
            +GGPGSGKGTQC  IV  +GYTHLS GDLLRAE+ SGS  G  +  ++++G++VP E  + +L+ AM    +    FLIDG+PR  +    FE     +P  +L+ D   E M++R+L R +  GR DDN ETI+KR + + +++ PV+ +YE +G VRK++A   V  VF  V
Sbjct:   14 VGGPGSGKGTQCEKIVHKYGYTHLSTGDLLRAEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKADTSKGFLIDGYPRQVQQGEEFER-RIAQPTLLLYVDAGPETMQKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDNVFSQV 186          
The following BLAST results are available for this feature:
BLAST of CN187738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KCY_MOUSE3.160e-4452.17UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1[more]
KCY_RAT5.390e-4452.17UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 ... [more]
UMPK_YEAST8.606e-4248.59Uridylate kinase OS=Saccharomyces cerevisiae GN=UR... [more]
KAD1_CAEEL8.905e-3948.59Probable adenylate kinase isoenzyme F38B2.4 OS=Cae... [more]
KAD1_CYPCA1.679e-3746.93Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN... [more]
KAD1_RAT2.425e-3644.25Adenylate kinase isoenzyme 1 OS=Rattus norvegicus ... [more]
KAD1_PIG2.425e-3645.71Adenylate kinase isoenzyme 1 OS=Sus scrofa GN=AK1 ... [more]
KAD1_BOVIN4.137e-3644.83Adenylate kinase isoenzyme 1 OS=Bos taurus GN=AK1 ... [more]
UMPK_SCHPO7.056e-3646.41Probable uridylate kinase OS=Schizosaccharomyces p... [more]
KAD1_RABIT9.216e-3644.25Adenylate kinase isoenzyme 1 OS=Oryctolagus cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187738 ID=CN187738; Name=CN187738; organism=Citrus sinensis; type=EST; length=789bp
AGTGAACATTGGCAATTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATA
TTCTTCTCTCTCTCTCCAAACAAAACAACGCTCGCAATTCGCTAAGATCG
GTTATTCAGACTGAGTTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTC
CTGTCAAGGAAGCAGATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTT
TTTGTTTTGGGTGGACCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACAT
TGTTGAACACTTTGGATACACCCATCTCAGTGCTGGTGATCTTCTCAGAG
CCGAAATCAAATCTGGCTCTGAAAATGGAACCATGATTCAGAACATGATT
AAAGAGGGAAAAATCGTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAA
AGCAATGGAGGAAAGTGGAAATGATAAATTTCTCATCGATGGTTTTCCCA
GAAACGAGGAAAATCGTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCA
GAATTCGTTCTGTTTTTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCAT
TTTGAATAGGAATCAGGGAAGAGAAGATGATAACGTTGAGACAATTAGGA
AGCGGTTTAAGGTTTTCTTAGAATCTAGTCTCCCTGTGGTTCAATATTAT
GAAGCTAAGGGTAAAGTTCGGAAGATTGATGCTGCAAAGCCTGTTGCAGA
GGTTTTTGATGCTGTTAAAGCTGTTTTTACCCCAAAAGATGAGAAGGCTG
CTGCTTAGGTCTTCTCTGTCCAGAGTATCAGATTTAATA
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