CN187738

Overview
NameCN187738
Unique NameCN187738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN187738_ssr55 microsatellite CN187738_ssr55:55..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:17..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD_BORRA (Adenylate kinase OS=Borrelia recurrentis (strain A1) GN=adk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.581e-17
Identity = 57/210 (27.14%), Postives = 102/210 (48.57%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-------------------------QG----REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 746
            LG PGSGKGT    +     Y H+S GDL R  I++ +  G  I+ +++ G++VP  +TIK+++  +    N D F++DGFPRN     A E    +E   ++ F  +E+ + +R+  R                          QG    R+DD  E+++ R + +   + P++ +Y    ++  IDA+K + EV   +  + +  ++K
Sbjct:    6 LGPPGSGKGTIAKILSNELNYYHISTGDLFRTNIENDTPLGKEIKQIVENGQLVPDSITIKVVEDKINTIDNRDNFILDGFPRNINQ--AIELDRLLENIKIINFLINEKLLVKRLSGRRICQSCCKIFNIYTLPTKEKEICDFCQGILYQRKDDTKESLKIRLQEYNLQTKPLINFYSNSNRLNNIDASKNINEVQKNLMEIISKIEKK 213          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD_PYRFU (Adenylate kinase OS=Pyrococcus furiosus GN=adk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.251e-16
Identity = 55/202 (27.23%), Postives = 95/202 (47.03%), Query Frame = 3
Query:  210 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 719
            G PGSGK TQ   IVE +G T++S+GDL+R EI  G+  G  +Q  +  G ++P  +   L+   +     D F++DG+PR  E   A E       I+ +  +    S EE  RR+  R                                REDD  E + KR+++++++  P++++Y+ +    KI+    + EV++ ++
Sbjct:    7 GPPGSGKSTQARRIVERYGLTYISSGDLIRKEIAEGTPLGREMQAYLARGDLIPDTIVNTLIISKLRRVRKD-FIMDGYPRTPEQVIALENYLYDHGIKIDVAIDIYVSLEESIRRVSGRRICPKCGAVYHVEFNPPKIPGRCDVCGAELVQREDDRPEVVEKRYRIYMKNMEPIIKFYQKQRIYVKINGHGNIDEVWERIR 207          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD_HALHL (Adenylate kinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=adk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.251e-16
Identity = 65/213 (30.52%), Postives = 99/213 (46.48%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN------------------RNQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKAAA 755
            LG PG+GKGTQ A+I E FG   +S GD+LRA +K+G+  G   + ++ EG +V  ++ + L+++ + ++   + FL DGFPR             I  + V+     +EE+  R+                    R +G           REDD  ET+R R  V+ E + P+V YY    +    DA  P     D  + V T +DE  AA
Sbjct:    6 LGPPGAGKGTQAAHICEAFGIPQISTGDMLRAAVKAGTPLGQQAKKIMDEGGLVSDDIILGLIEERVAQADCANGFLFDGFPRTIAQADGLND-QGIRIDAVVEIQVPDEEIVDRMAGRRVHPGSGRVYHVTHNPPRQEGKDDVTGEDLVQREDDREETVRHRLGVYHEQTRPLVDYYSQWAQKGGADA--PAYITVDGQRPVETVRDEILAA 215          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD_SACD2 (Adenylate kinase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=adk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.634e-16
Identity = 57/179 (31.84%), Postives = 89/179 (49.72%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYE 653
            LG PG+GKGTQ   I+E +G   +S GD+LRA +K+GS  G  +++++  G +V  ++ I L+++ + E    K FL DGFPR      A  A   +  + VL     +EE+  R+  R                   +G           R+DD  ET+RKR  V+ E + P+V +Y+
Sbjct:    6 LGAPGAGKGTQAKFIMEAYGVPQISTGDMLRAAVKAGSPLGLKVKDIMTSGGLVSDDIIIDLVKERIAEPDCQKGFLFDGFPRTIPQAEALVA-AGVNIDHVLEIFVEDEEIVSRLSGRRVHEASGRVYHVKHNAPKTEGVDDETGEPLVQRDDDKEETVRKRLAVYHEQTEPLVDFYK 183          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD_HALMA (Adenylate kinase OS=Haloarcula marismortui GN=adk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.634e-16
Identity = 59/204 (28.92%), Postives = 97/204 (47.55%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA----EIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--------------NQ---------------GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 719
            +G PG+GKGTQ AN+ E +G  H++ GD LRA    +I          +  ++ G +VP  V   ++ +A+ ++  D F++DG+PRN E     E +T +  + +L  D S EE+  R+  R              NQ                R+DDN E++R R  VF +++ PV+ +Y        ID  +   EV+  ++
Sbjct:    9 VGPPGAGKGTQSANLAEAYGVEHITTGDALRANKDMDISDMDTEYDTPREYMEAGDLVPDAVVNAIVDEALSQA--DGFVLDGYPRNLEQAEELEGMTAL--DVILSLDVSREELVDRLTGRRVCDDCGTNYHVEFNQPEEDGVCDECGGDLIQRDDDNEESVRNRLDVFDDNTAPVIDHYGDHDGFVAIDGEQTPDEVWSEIQ 208          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD_CHLAB (Adenylate kinase OS=Chlamydophila abortus GN=adk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.634e-16
Identity = 58/200 (29.00%), Postives = 93/200 (46.50%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFE--AVTKIEPEFVLFFDCSEEEMERRI------------LNRNQG-------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 722
            +G PGSGKGTQ   +       H+S+G+L R+ I S S  G      I +G +VP  +   ++Q+A+ +       +IDGFPR  +         +       V+  D S EE+ RRI             N+NQG             R DD +E I KR + + + + P++ YY+  GK+ +I +     +VF +++A
Sbjct:   10 MGPPGSGKGTQSQRLAHQLKLPHMSSGELFRSAIDSASPLGIKAAEYINQGLLVPDAIVWGMVQEALNQPECQSGCIIDGFPRTLDQAILLNDFFMQSYADYRVIQLDVSNEEIIRRIHSRFICPSCKHVYNQNQGLSECPTCQMKLVRRSDDTLEVIHKRLESYEKLTAPLIDYYQELGKLTRIPSEASPDDVFQSIEA 209          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD_BIFLO (Adenylate kinase OS=Bifidobacterium longum GN=adk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.634e-16
Identity = 50/172 (29.07%), Postives = 91/172 (52.91%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFE---AVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV 704
            +G  G GKGTQ A + EHF    +S GD+ R  IK+ +E G    +   +G++VP  +T K+++ +  +E   + +++DG+PRN     A +   A      + V+  + + + +  R+  R   QGR DD  E I KR + + + + P++  YEA+G +  ++    + E+
Sbjct:    6 MGPQGVGKGTQAALLAEHFNIPTISTGDIFRYNIKNKTELGLEAMSYTDKGELVPDSLTNKIVKDRLAKEDCKNGWILDGYPRNAAQVTALDEMLADLDTPLDHVVALEAARDVLLERMKKRAAEQGRADDTPEAIAKRLETYEKETAPLLDIYEARGLLVVVNGVGDIDEI 177          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD_SODGM (Adenylate kinase OS=Sodalis glossinidius (strain morsitans) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.134e-16
Identity = 61/208 (29.33%), Postives = 100/208 (48.08%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEAK---GKVR--KIDAAKPVAEVFDAVKAV 725
            LG PG+GKGTQ   I+E +G   +S GD+LRA +K+ SE G   + ++  GK+V  E+ I L ++ +++    + FL+DGFPR      A + V  I  ++VL F   +  +  RI+ R                                R+DD  +T+RKR   + + + P++ YY  +   G  R   +D  + V+EV   + A+
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAQSELGRQAKALMDAGKLVTDELVIALAKERIKQDHCRNGFLLDGFPRTLPQADAMKEV-GIAVDYVLEFAVPDSLIIDRIVGRRVHAPSGRVYHVKFNPPKQEGKDDVTGELLTSRKDDQEDTVRKRLVEYHQQTAPLIDYYRKEADAGNTRYFTLDGTRNVSEVSAELAAI 212          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD_GEOSM (Adenylate kinase OS=Geobacter sp. (strain M21) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.134e-16
Identity = 59/199 (29.65%), Postives = 89/199 (44.72%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR----NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV 704
            LG PG GKGTQ   +++ FG   +S GD+LRA +K  +  G   +  +  G +VP EV I ++++ + +    K F++DGFPR      A   V        + V+     +EE+  R+  R    N G                         REDD  ETI  R  V+   + P++ YY+A G +R +D    V  V
Sbjct:    6 LGPPGVGKGTQAKLLIDRFGIPQISTGDILRAAVKELTPMGAKAKGYMDSGALVPDEVVIGIVEERLAQEDCQKGFILDGFPRTVPQADALGQVLSGMGKSIDHVVSLSVDKEELLTRLTGRRACANCGAGYHVDFAPSKVAGVCDACSGQLVQREDDKEETILNRLSVYEAQTAPLIAYYQAAGVLRSVDGLGTVEAV 204          
BLAST of CN187738 vs. ExPASy Swiss-Prot
Match: KAD_CLOPS (Adenylate kinase OS=Clostridium perfringens (strain SM101 / Type A) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.134e-16
Identity = 52/203 (25.62%), Postives = 96/203 (47.29%), Query Frame = 3
Query:  207 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFV---LFFDCSEEEMERRILNR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 716
            LG PG+GKGTQ  +I   +   H+S GD+ R  I   +  G   ++ +  G++VP EVTI +++  +++    + +L+DGFPR      A +       E +   L  +  +E +  R+  R                  N G           R+DD  ET+++R  V+   + P++ +Y+ K ++  +D  + + EVF+++
Sbjct:    6 LGPPGAGKGTQAKSISNRYSIPHISTGDIFRKNISENTPLGIEAKSYMDNGQLVPDEVTINMVKDRLQQDDCKNGYLLDGFPRTVHQAEALDNFLTEREESIDTALLIEVPKEFILERMTGRRVCPSCGASYHIKFNPPTNDGKCDLCGSDVIQRKDDTEETVKERLDVYENQTQPLIDFYKNKKQLSVVDGTQAINEVFESI 208          
The following BLAST results are available for this feature:
BLAST of CN187738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_BORRA9.581e-1727.14Adenylate kinase OS=Borrelia recurrentis (strain A... [more]
KAD_PYRFU1.251e-1627.23Adenylate kinase OS=Pyrococcus furiosus GN=adk PE=... [more]
KAD_HALHL1.251e-1630.52Adenylate kinase OS=Halorhodospira halophila (stra... [more]
KAD_SACD21.634e-1631.84Adenylate kinase OS=Saccharophagus degradans (stra... [more]
KAD_HALMA1.634e-1628.92Adenylate kinase OS=Haloarcula marismortui GN=adk ... [more]
KAD_CHLAB1.634e-1629.00Adenylate kinase OS=Chlamydophila abortus GN=adk P... [more]
KAD_BIFLO1.634e-1629.07Adenylate kinase OS=Bifidobacterium longum GN=adk ... [more]
KAD_SODGM2.134e-1629.33Adenylate kinase OS=Sodalis glossinidius (strain m... [more]
KAD_GEOSM2.134e-1629.65Adenylate kinase OS=Geobacter sp. (strain M21) GN=... [more]
KAD_CLOPS2.134e-1625.62Adenylate kinase OS=Clostridium perfringens (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187738 ID=CN187738; Name=CN187738; organism=Citrus sinensis; type=EST; length=789bp
AGTGAACATTGGCAATTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATA
TTCTTCTCTCTCTCTCCAAACAAAACAACGCTCGCAATTCGCTAAGATCG
GTTATTCAGACTGAGTTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTC
CTGTCAAGGAAGCAGATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTT
TTTGTTTTGGGTGGACCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACAT
TGTTGAACACTTTGGATACACCCATCTCAGTGCTGGTGATCTTCTCAGAG
CCGAAATCAAATCTGGCTCTGAAAATGGAACCATGATTCAGAACATGATT
AAAGAGGGAAAAATCGTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAA
AGCAATGGAGGAAAGTGGAAATGATAAATTTCTCATCGATGGTTTTCCCA
GAAACGAGGAAAATCGTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCA
GAATTCGTTCTGTTTTTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCAT
TTTGAATAGGAATCAGGGAAGAGAAGATGATAACGTTGAGACAATTAGGA
AGCGGTTTAAGGTTTTCTTAGAATCTAGTCTCCCTGTGGTTCAATATTAT
GAAGCTAAGGGTAAAGTTCGGAAGATTGATGCTGCAAAGCCTGTTGCAGA
GGTTTTTGATGCTGTTAAAGCTGTTTTTACCCCAAAAGATGAGAAGGCTG
CTGCTTAGGTCTTCTCTGTCCAGAGTATCAGATTTAATA
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