CK938493

Overview
NameCK938493
Unique NameCK938493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: TTC28_HUMAN (Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 3
Query:  105 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 404
            E   + N A   GD+  A+  + EA+++ P N +LYSNRSAA+  +  Y  AL DA K   L P W K Y R G A   L  + +A+ ++  GL  DP +
Sbjct:   60 EKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKS 159          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: SPAG1_MOUSE (Sperm-associated antigen 1 OS=Mus musculus GN=Spag1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 3
Query:   96 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 407
            +A+  K KGN AF SGDYE AV ++T ++S  P   + Y+NR+ A   L  ++ AL D +K +EL P   K   R    +       EAV+  +K L ++P+N+
Sbjct:  212 LANREKGKGNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 314          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: DNJC7_PONAB (DnaJ homolog subfamily C member 7 OS=Pongo abelii GN=DNAJC7 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.336e-11
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = 3
Query:   99 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 404
            A+  K +GNA ++  DY  A  ++T+AI + P N   Y NR+A    L  + +AL DA+++V L   + +G  R G  HL L + + A  S+++ L++D  N
Sbjct:   28 AETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGRLREGKCHLSLGNAMAACRSFQRALELDHKN 129          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  111 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 404
            K KGN  F  G Y+ A+  +T+ +   P N VL +NR++A+  L  +A A +D    + L   ++K Y+R GAA   LQ   +A   Y+K L+++P+N
Sbjct:  138 KEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDN 235          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: TTC31_HUMAN (Tetratricopeptide repeat protein 31 OS=Homo sapiens GN=TTC31 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.976e-11
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 3
Query:   99 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGL 386
            + E    G +   +G Y  AV  FT+A+ L+P +H L+ NRS  H  L   A ALADA+  + L+P W +G  RLG A +GLQ + EA   +++ L
Sbjct:  305 SQELAKLGTSFAQNGFYHEAVVLFTQALKLNPQDHRLFGNRSFCHERLGQPAWALADAQVALTLRPGWPRGLFRLGKALMGLQRFREAAAVFQETL 400          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.976e-11
Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  111 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 404
            K KGN  F  G Y+ A+  +T+ +   P N VL +NR++A+  L  +A A +D    + L   ++K Y+R GAA   LQ   +A   Y K L+++P+N
Sbjct:  137 KEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDN 234          
The following BLAST results are available for this feature:
BLAST of CK938493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TTC28_HUMAN7.830e-1238.00Tetratricopeptide repeat protein 28 OS=Homo sapien... [more]
SPAG1_MOUSE7.830e-1236.54Sperm-associated antigen 1 OS=Mus musculus GN=Spag... [more]
DNJC7_PONAB1.336e-1134.31DnaJ homolog subfamily C member 7 OS=Pongo abelii ... [more]
RPAP3_MOUSE1.744e-1135.71RNA polymerase II-associated protein 3 OS=Mus musc... [more]
TTC31_HUMAN2.976e-1139.58Tetratricopeptide repeat protein 31 OS=Homo sapien... [more]
RPAP3_RAT2.976e-1135.71RNA polymerase II-associated protein 3 OS=Rattus n... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_H12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938493 ID=CK938493; Name=CK938493; organism=Citrus sinensis; type=EST; length=835bp
GGGGAAAGGAGAAGTTCAAAGGGCAGTACTTTGCTCTAAATATTACTGCA
ACCACAACCACAAGCCAATCATTCTTCAATTAATTCCTTGCTGACATGGC
AGACGAAGCCAAAGCGAAAGGAAACGCTGCGTTTTCGTCCGGGGATTACG
AAGCCGCGGTGCGCCACTTCACGGAGGCCATCTCTTTATCTCCGGATAAT
CACGTGCTGTATTCCAATCGATCCGCCGCGCACGCATCTCTCCACAACTA
CGCCGACGCCTTAGCCGACGCCAAGAAGACCGTCGAGCTTAAGCCGGACT
GGTCCAAAGGCTACAGCCGACTTGGCGCTGCTCACCTCGGATTACAGGAC
TATATCGAAGCTGTTAACTCCTACAAGAAAGGACTTGATATCGATCCTAA
CAATGAAGCCCTCAAATCCGGCTTGGCCGATGCTAAAGCGGCGGCCTCCG
CGTCGTTCAGATCTCGTTCCCCGCCGGCCGATAATCCATTTGGTTCTGCT
TTTGCCGGACCTGAGATGTGGGCAAAATTAACGGCGGATCCGACTACGAG
AAGTTATCTCGACCAAGATGATTTTCGTAATATGATGAAGGATATTCAGA
GAAATCCTAACAACTTAAACTTATACTTGAAGGACCAGCGGGTGATGCAG
GCTTTGGGGGTTTTATTAAATGTGAAGTTTAAGGGGCCCACTGGTGGTGA
TGACGTGGAAATGCAGGACGAAGATGCCCCAAAAGGACCGGAGACGTCTA
AGGAGGAGACGAGGAAGCCGGAGTCTGAGCCCGAGCCTGAGCCAATGGAG
CTAACGGAGGAGGAGAAGGAAGCTAAGGAAAGAAA
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