CN187736

Overview
NameCN187736
Unique NameCN187736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.875e-26
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = -1
Query:  239 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAK 580
            L+GF S   IKV+  TNR DILDPAL+R GR+DRKIEFP+P +  R  IL+IHSRKMN+   +N ++++   +  +GA+LKAVC EAGM A R     V+ EDF   + +V  K
Sbjct:  277 LDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQEDFEMAVSKVMKK 390          
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.875e-26
Identity = 60/114 (52.63%), Postives = 74/114 (64.91%), Query Frame = -1
Query:  239 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAK 580
            L+GF +   IKVI ATNR DILD AL+R GR+DRKIEFP P EEAR  IL+IHSRKMN+   +N  ++A      +GA++K VC EAGM A R     V  EDF   + +V  K
Sbjct:  280 LDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 393          
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 59/116 (50.86%), Postives = 76/116 (65.52%), Query Frame = -1
Query:  233 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKK 580
            L+GF +   IK+I ATNR DILDPAL+R GR+DRKIEFP P+  ARA IL+IHSRKMN+   +N  ++A   +  +GA +K VC EAGM A R     V  EDF   + +V  K +
Sbjct:  279 LDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQ 394          
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.904e-26
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = -1
Query:  230 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKKA 580
            L+GF +   +KVI ATNR + LDPAL+R GR+DRKIEFP P  + + +I +IH+ KMN+  DVN EE   S DD +GA +KA+C E+G+LA R     V H DF +   +V  +K A
Sbjct:  315 LDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVLYRKTA 431          
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 55/119 (46.22%), Postives = 81/119 (68.07%), Query Frame = -1
Query:  224 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKKASL 580
            ++GF     ++++AATNR DILDPAL+R GR DR I+ P PT EAR +IL+IH+RKMN+  DV+  ++A  TD+ +GA L A+ +EAGM A R +   V+  DFN  + +V  ++  S+
Sbjct:  290 MDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEAGMFAIRNNRDVVDSSDFNAAVAKVMGERNRSM 408          
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = -1
Query:  239 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAK 580
            L+GF S   IK+I ATNR DILDPAL+R GR+DRKIEFP+P E AR  IL+IHSR+MN+   +N  ++A      +GA++KA C EAGM A R     V  ED    + +V  +
Sbjct:  288 LDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFPNPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEAGMFALRERRVHVTQEDLEMAVAKVMKR 401          
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = -1
Query:  233 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKK 580
            L+GF S   +KVI ATNR + LDPAL+R GR+DRKIEFP P E+ + RI  IH+ +M +  DVN  EL  + DD +GA +KA+C EAG++A R    +V +EDF +    V  +KK
Sbjct:  315 LDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 430          
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 59/114 (51.75%), Postives = 77/114 (67.54%), Query Frame = -1
Query:  239 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAK 580
            L+GF     +KVI ATNR DILDPA++R GR DR IE P PT E R +I +IH+RKM +  DV+F+ELAR T+  +GA +KA+C EAGM A R +  +V   DF + I +V  K
Sbjct:  272 LDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIREERAKVTMLDFTKAIEKVLKK 385          
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 56/123 (45.53%), Postives = 85/123 (69.11%), Query Frame = -1
Query:  215 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQV-QAKKKASLNYY 580
            L+GF +  ++K+I ATNR D+LDPAL+R GRLDRKIE P P E++R  IL+IH+  +  H ++++E + +  + FNGA L+ +C EAGM A R +   V HEDF + + ++ +AKK  S ++Y
Sbjct:  270 LDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSSHY 392          
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = -1
Query:  233 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKK 580
            ++GF +  ++K+I ATNR D+LDPAL+R GRLDRKIE P P E  R  +L+IH+  +  H DV++E +A+  D FN A L+ VC EAGM A R +   V  EDF + + + Q  KK
Sbjct:  268 MDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRKCQEAKK 383          
The following BLAST results are available for this feature:
BLAST of CN187736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
PRS8_DICDI2.875e-2650.8826S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS8_BOVIN2.875e-2652.6326S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS8_YEAST3.755e-2650.8626S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS4_DICDI4.904e-2648.7226S protease regulatory subunit 4 homolog OS=Dicty... [more]
PSMR_UNCMA8.365e-2646.22Proteasome-activating nucleotidase OS=Uncultured m... [more]
PRS8_NAEFO8.365e-2650.0026S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS4_DROME8.365e-2649.1426S protease regulatory subunit 4 OS=Drosophila me... [more]
PSMR_ARCFU1.093e-2551.75Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PS10A_ARATH1.093e-2545.5326S protease regulatory subunit 10B homolog A OS=A... [more]
PRS10_DICDI1.093e-2547.4126S protease regulatory subunit S10B OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187736 ID=CN187736; Name=CN187736; organism=Citrus sinensis; type=EST; length=580bp
TTTTTTTTTTTTTTTTTGCACAAATCTTTTCTTGAAAATAGAACTTGGAT
TTTTCAGCTAATGCATTTGTCACAATTATCATGTTTTCTTCTAAATTTCG
AAACTTAGGGCAAAGTTTATATTAAAACAAAGTATTACATCAATGAATTG
AAAAAACACATGATATTAACCTAACTCCCAAGAGGAGCTTCCTCTCGGGT
ATCAATGTCTAGGCATAATAATTCAGGCTAGCCTTCTTCTTAGCCTGGAC
CTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCTGTAGCATCAC
GGCGAAAAGCTAGCATTCCTGCTTCAACACAGACCGCTTTTAGTTGTGCC
CCATTGAAATCATCAGTGGACCGAGCAAGTTCTTCAAAATTGACATCTGG
GTGAACATTCATCTTCCTTGAATGGATCTGCAAAATACGAGCTCTTGCTT
CTTCAGTGGGATGAGGGAACTCAATTTTGCGATCCAATCGACCAGAACGC
ATAAGAGCAGGGTCCAAAATATCAGCACGATTTGTTGCTGCTATCACCTT
AATCCGATCATCACTACTAAATCCCTCAAG
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