CX675503

Overview
NameCX675503
Unique NameCX675503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_STRCO (Fumarate hydratase class II OS=Streptomyces coelicolor GN=fumC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 49/130 (37.69%), Postives = 68/130 (52.31%), Query Frame = -1 
Query:  432 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAAL-----KLGVLNSEEFDNLVVPEKMIGP 806
            AQV GN   +   G+ G+FELNV  P+IA  +L S+RLL + S       V GI A+ ER  +    S  +VT LN  +GY+ AA VAK+A  E  T++   L     + G L  E+ D  +   +M  P
Sbjct:  332 AQVTGNDATVAAAGAAGNFELNVMLPVIAKNVLESVRLLANVSRLLADRTVDGIVAHPERAREYAESSPSVVTPLNKYLGYEEAAKVAKRALAERKTIRQTVLEGGYVERGDLTREQLDQALDVLRMTRP 461
The following BLAST results are available for this feature:
BLAST of CX675503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_STRCO3.570e-1437.69Fumarate hydratase class II OS=Streptomyces coelic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F09-L18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675503 ID=CX675503; Name=CX675503; organism=Citrus sinensis; type=EST; length=809bp
TTAGTCCAATACGTATTATTCGAAAAATTTGTTCAATTGAATAAGATCTT
GAGTGCTCATTTTAGGGTTCCTTTTAGCCTCAAAATTATTCTCATTTATT
CTTGTATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAG
GTCTTCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATG
ACATATCACCGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTT
TTTGGTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATT
TGGATCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCG
CAGAAACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAG
GAGTTTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCA
GGTACCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAA
TGCAGCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTG
CCGCAGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATC
AATGACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCC
TCTCACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCA
GTGAATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCA
AAATGGCCATTTGATCCACCCACTGTGATGGGCACATGGTTCCCAATAAC
CTGAGCACA
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