CX675503

Overview
NameCX675503
Unique NameCX675503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_SALTI (Fumarate hydratase class II OS=Salmonella typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 73/125 (58.40%), Postives = 95/125 (76.00%), Query Frame = -1
Query:  435 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 809
            C QV+GN V I +GG++G+FELNV++PM+    L ++RLL D  ASF ++C  GI+ NRERI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK +A+ LG L+  EFD  V PE M+G
Sbjct:  337 CCQVMGNDVAINMGGASGNFELNVYRPMVIHNFLQTVRLLADGMASFNQHCASGIEPNRERITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKASAVALGYLSDAEFDAWVRPELMVG 461          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_HELPY (Fumarate hydratase class II OS=Helicobacter pylori GN=fumC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.809e-35
Identity = 72/124 (58.06%), Postives = 93/124 (75.00%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+GN   I +  S G+FELNVFKP+I    L SLRLL D+  SF  +C  GI+ NRE+I   LH SLMLVT+LNP +GY+NAA +AK AHK+G +LK++AL+L +L++E+FD  VVPEKMIGP
Sbjct:  338 QVMGNDTAIGIAASQGNFELNVFKPVIIYNFLQSLRLLSDSMESFNIHCASGIEPNREKIDYYLHHSLMLVTALNPHVGYENAAKIAKNAHKKGISLKESALELKLLSAEDFDKFVVPEKMIGP 461          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_HELPJ (Fumarate hydratase class II OS=Helicobacter pylori J99 GN=fumC PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.258e-35
Identity = 71/124 (57.26%), Postives = 93/124 (75.00%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+GN   I +  S G+FELNVFKP+I    L SLRLL D+  SF  +C  GI+ N+E+I   LH SLMLVT+LNP +GY+NAA +AK AHK+G +LK++AL+L +L++E+FD  VVPEKMIGP
Sbjct:  338 QVMGNDTAIGIAASQGNFELNVFKPVIIYNFLQSLRLLSDSMESFNIHCASGIEPNKEKIDYYLHHSLMLVTALNPHVGYENAAKIAKNAHKKGISLKESALELKLLSAEDFDQFVVPEKMIGP 461          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_RHIME (Fumarate hydratase class II OS=Rhizobium meliloti GN=fumC PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 8.173e-35
Identity = 72/127 (56.69%), Postives = 89/127 (70.08%), Query Frame = -1
Query:  429 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 809
            C QV GNH  +T  GS GHFELNV+ P++A   L S++LL DA+ SF  NCV GI+A  + I   L  SLMLVT+L PKIGYDNAA +AK AHK GTTL++ A+  G +  EEFD +V PE MIGP+
Sbjct:  337 CVQVFGNHAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLMLVTALAPKIGYDNAAKIAKTAHKNGTTLREEAVGGGYVTDEEFDAVVRPETMIGPA 463          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_CHRVO (Fumarate hydratase class II OS=Chromobacterium violaceum GN=fumC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.106e-34
Identity = 70/124 (56.45%), Postives = 93/124 (75.00%), Query Frame = -1
Query:  438 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 809
            C QV+GN   + +G ++G+FELNVFKP+IA   L S RLL D   S  ++CV G++ANR RI++L+  SLMLVT+LNP IGYD AAA+AK AH+ GTTL++AAL LG L++E+FD  V PE M+
Sbjct:  338 CCQVLGNDAALAIGAASGNFELNVFKPLIAHNFLQSARLLADGMDSLREHCVDGMEANRARIAELMARSLMLVTALNPHIGYDKAAAIAKHAHRHGTTLREAALALGHLSAEQFDAWVRPEDMV 461          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_PASMU (Fumarate hydratase class II OS=Pasteurella multocida GN=fumC PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.298e-34
Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = -1
Query:  435 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 809
            CAQV+GN   I+  G+ GHF+LNVFKP++A+  L S +LL DA  SF+++C  GI+ N  RI K L +SLMLVT+LN  IGY+NAA +AK AHK GTTLK+ A+ LG++ +E+FD  V PE M+G
Sbjct:  337 CAQVLGNDTTISFAGTQGHFQLNVFKPVMAANFLQSAQLLADACVSFDEHCAVGIEPNFPRIKKQLDDSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQFDEWVRPEDMVG 461          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_COXBU (Fumarate hydratase class II OS=Coxiella burnetii GN=fumC PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.298e-34
Identity = 71/124 (57.26%), Postives = 93/124 (75.00%), Query Frame = -1
Query:  438 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 809
            C QVIGN   IT+ GS G+FELNV+KP++A  L+ S+ LL DA  SF  +C  GI+ N+E+I+  L+ SLMLVT+LN  IGYD A+ +AKKA+KEGTTLK+AAL+LG L + EFD  V P+KM+
Sbjct:  334 CVQVIGNDTTITIAGSQGNFELNVYKPVMAYNLIQSIYLLSDACRSFNDHCAVGIKPNQEKINDYLNNSLMLVTALNQIIGYDKASEIAKKAYKEGTTLKEAALQLGYLTASEFDKAVDPKKMV 457          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_BORPE (Fumarate hydratase class II OS=Bordetella pertussis GN=fumC PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.298e-34
Identity = 72/122 (59.02%), Postives = 90/122 (73.77%), Query Frame = -1
Query:  441 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 806
            AQV+GN V I VGG++G+FELNVFKP++    L S+RLL D   SF+K+C  GI+ NRERI++L+  SLMLVT+LNP IGYD AA +AKKAHKE  +LK+AAL LG L   +F   VVP  M
Sbjct:  337 AQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDM 458          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_BORPA (Fumarate hydratase class II OS=Bordetella parapertussis GN=fumC PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.298e-34
Identity = 72/122 (59.02%), Postives = 90/122 (73.77%), Query Frame = -1
Query:  441 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 806
            AQV+GN V I VGG++G+FELNVFKP++    L S+RLL D   SF+K+C  GI+ NRERI++L+  SLMLVT+LNP IGYD AA +AKKAHKE  +LK+AAL LG L   +F   VVP  M
Sbjct:  337 AQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDM 458          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_BORBR (Fumarate hydratase class II OS=Bordetella bronchiseptica GN=fumC PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.298e-34
Identity = 72/122 (59.02%), Postives = 90/122 (73.77%), Query Frame = -1
Query:  441 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 806
            AQV+GN V I VGG++G+FELNVFKP++    L S+RLL D   SF+K+C  GI+ NRERI++L+  SLMLVT+LNP IGYD AA +AKKAHKE  +LK+AAL LG L   +F   VVP  M
Sbjct:  337 AQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDM 458          
The following BLAST results are available for this feature:
BLAST of CX675503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_SALTI9.654e-3658.40Fumarate hydratase class II OS=Salmonella typhi GN... [more]
FUMC_HELPY2.809e-3558.06Fumarate hydratase class II OS=Helicobacter pylori... [more]
FUMC_HELPJ6.258e-3557.26Fumarate hydratase class II OS=Helicobacter pylori... [more]
FUMC_RHIME8.173e-3556.69Fumarate hydratase class II OS=Rhizobium meliloti ... [more]
FUMC_CHRVO3.106e-3456.45Fumarate hydratase class II OS=Chromobacterium vio... [more]
FUMC_PASMU5.298e-3455.20Fumarate hydratase class II OS=Pasteurella multoci... [more]
FUMC_COXBU5.298e-3457.26Fumarate hydratase class II OS=Coxiella burnetii G... [more]
FUMC_BORPE5.298e-3459.02Fumarate hydratase class II OS=Bordetella pertussi... [more]
FUMC_BORPA5.298e-3459.02Fumarate hydratase class II OS=Bordetella parapert... [more]
FUMC_BORBR5.298e-3459.02Fumarate hydratase class II OS=Bordetella bronchis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F09-L18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675503 ID=CX675503; Name=CX675503; organism=Citrus sinensis; type=EST; length=809bp
TTAGTCCAATACGTATTATTCGAAAAATTTGTTCAATTGAATAAGATCTT
GAGTGCTCATTTTAGGGTTCCTTTTAGCCTCAAAATTATTCTCATTTATT
CTTGTATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAG
GTCTTCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATG
ACATATCACCGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTT
TTTGGTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATT
TGGATCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCG
CAGAAACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAG
GAGTTTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCA
GGTACCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAA
TGCAGCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTG
CCGCAGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATC
AATGACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCC
TCTCACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCA
GTGAATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCA
AAATGGCCATTTGATCCACCCACTGTGATGGGCACATGGTTCCCAATAAC
CTGAGCACA
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