CX675503

Overview
NameCX675503
Unique NameCX675503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_RHILO (Fumarate hydratase class II OS=Rhizobium loti GN=fumC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.226e-32
Identity = 68/126 (53.97%), Postives = 86/126 (68.25%), Query Frame = -1
Query:  432 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 809
            C QV GN+  +T  GS GHFELNV+ P++A   L S++LL DAS SF  NCV GI+A  + I   L  SLMLVT+L P IGYDNAA +AK AHK GTTL++ AL  G+++  ++D LV PE M  P
Sbjct:  339 CVQVFGNNAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLSDASVSFTDNCVVGIEAREDNIKAALDRSLMLVTALAPTIGYDNAAKIAKTAHKNGTTLREEALATGLVSEVDYDRLVRPEDMTHP 464          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_HAEDU (Fumarate hydratase class II OS=Haemophilus ducreyi GN=fumC PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.907e-32
Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = -1
Query:  435 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 806
            AQV+GN   I+  GS GHF+LNVFKP++A+  L S +LL D   SF+++C  GI+ N  RI + L  SLMLVT+LN  IGY+NAA +AK AHK GTTLK+ A+ LG++ +E+FD  V P+ M+G
Sbjct:  338 AQVLGNDTTISFAGSQGHFQLNVFKPVMAANFLQSAQLLADVCISFDEHCASGIEPNYPRIQQQLENSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQFDQWVRPQNMVG 461          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMH_SCHPO (Fumarate hydratase, mitochondrial OS=Schizosaccharomyces pombe GN=fum1 PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 4.958e-32
Identity = 71/124 (57.26%), Postives = 88/124 (70.97%), Query Frame = -1
Query:  438 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 809
            CAQV+GNH  ITV G++GH ELNVFKP++A  +L S+RLLGDA  SF  +CV GI+ N E I++ L +SLMLVT+LNP IGYDN A +AK A K  +TLK   + LG    E+FD  V PE MI
Sbjct:  392 CAQVMGNHATITVAGASGHCELNVFKPLLAKNILSSIRLLGDACESFTDHCVVGIEPNYEGIARHLRDSLMLVTALNPHIGYDNCAKIAKTALKNKSTLKHEFVTLGFGTPEQFDEWVRPELMI 515          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_SYNY3 (Fumarate hydratase class II OS=Synechocystis sp. (strain PCC 6803) GN=fumC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.958e-32
Identity = 71/126 (56.35%), Postives = 85/126 (67.46%), Query Frame = -1
Query:  432 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 809
            C QV+GN   I    S G+FELNVFKP+I    LHSL LL DA ASF ++ V G+Q N  ++   L  SLMLVT+LNP IGYDNAA VAK A  +G TLK AA+ LG+L   +FD  VVPE+MI P
Sbjct:  338 CVQVMGNDATIGFAASQGNFELNVFKPVIIHNFLHSLHLLSDACASFRQHLVVGLQVNESKVKDFLDTSLMLVTALNPHIGYDNAALVAKTAFAQGITLKQAAVDLGLLTPAQFDAWVVPEQMIAP 463          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_CAMJE (Fumarate hydratase class II OS=Campylobacter jejuni GN=fumC PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.214e-31
Identity = 68/124 (54.84%), Postives = 88/124 (70.97%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+GN V I    S G+FELNVFKP+I    L SL LL D+  SF  +C  GI+ NR +I   LH SLMLVT+LNP IGY+NAA VAK AHK+G +LK++ ++LG+++ E+F+  V P KMIGP
Sbjct:  338 QVMGNDVAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEPNRAKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESTMELGLVSEEDFNKFVDPTKMIGP 461          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_BACSU (Fumarate hydratase class II OS=Bacillus subtilis GN=fumC PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.482e-31
Identity = 68/125 (54.40%), Postives = 86/125 (68.80%), Query Frame = -1
Query:  432 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 806
            AQ++GN   I    S G+FELNVFKP+I    L S++LL D   SF   C  GI+ N+E I + L  SLMLVT+LNP IGY+NAA +AK AHKEG TLK+AALKL +L  E+F+ +V PE M+ P
Sbjct:  336 AQIMGNDATIGFAASQGNFELNVFKPVIIYNFLQSVQLLSDGMNSFHDKCAVGIEPNKETIQENLSNSLMLVTALNPHIGYENAAKIAKLAHKEGLTLKEAALKLELLTEEQFNEMVKPEDMVKP 460          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_BACHD (Fumarate hydratase class II OS=Bacillus halodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.160e-31
Identity = 68/125 (54.40%), Postives = 86/125 (68.80%), Query Frame = -1
Query:  432 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 806
            +QVIGN   I    S G+FELNVFKP+I    L S  LL D   +F   C+ G++AN   I K L+ESLMLVT+LNP IGY+NAA +AKKAH EG TLK+AA++ G+L  EEF+ +V P KM+ P
Sbjct:  336 SQVIGNDATIAFAASQGNFELNVFKPVIIYNFLQSTTLLTDGLRTFHDKCLIGLEANETIIKKHLNESLMLVTALNPHIGYENAAKIAKKAHAEGLTLKEAAMQSGLLTEEEFEKMVDPAKMVHP 460          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_NITEU (Fumarate hydratase class II OS=Nitrosomonas europaea GN=fumC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.221e-30
Identity = 68/121 (56.20%), Postives = 85/121 (70.25%), Query Frame = -1
Query:  441 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 803
            QV+GN V I +GG+ G+FELN  KP+I    L S RLL D + SF  +C  GI AN  RI + L ESLMLVT+LNP IGYD AA +AKKAH E  TLK+AA++LG + +E+FD  V P+KM
Sbjct:  339 QVMGNDVAINLGGAMGNFELNTMKPLIIHNFLQSTRLLADGAESFNTHCAAGITANTVRIKQHLQESLMLVTALNPHIGYDKAAEIAKKAHHEMLTLKEAAIRLGYVTAEQFDVWVDPQKM 459          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC2_PSEAE (Fumarate hydratase class II 2 OS=Pseudomonas aeruginosa GN=fumC2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.083e-30
Identity = 65/122 (53.28%), Postives = 87/122 (71.31%), Query Frame = -1
Query:  438 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 803
            QV+GN   I+   S GH +LNVFKP+I   LL S+RLL D   +F K+CV G++ + +R++ LL   LMLVT+LNP IGYD AA +AKKA+ EGTTL+ AAL+LG L+  +FD  V PE+M+
Sbjct:  337 QVMGNDSTISFAASQGHLQLNVFKPVIVYNLLESIRLLADGCRNFNKHCVAGLEPDAQRMADLLERGLMLVTALNPHIGYDKAAEIAKKAYAEGTTLRAAALQLGYLDEAQFDEWVRPEQML 458          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_OCEIH (Fumarate hydratase class II OS=Oceanobacillus iheyensis GN=fumC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.641e-30
Identity = 66/124 (53.23%), Postives = 88/124 (70.97%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+GN   I    S G+FELNVFKP+IA   L S +LL D+  SF++ C  GI+ N E+I K L++SLMLVT+LNP IGY+NAA +AKKA  + +TLK+ A++LG+L  E+FD  V PE+M  P
Sbjct:  337 QVMGNDAAIGFAASQGNFELNVFKPVIAYNFLQSSQLLADSIISFDERCAVGIEPNHEQIEKNLNDSLMLVTALNPHIGYENAAKIAKKAFADNSTLKETAVELGLLTEEQFDEYVNPEEMTYP 460          
The following BLAST results are available for this feature:
BLAST of CX675503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_RHILO2.226e-3253.97Fumarate hydratase class II OS=Rhizobium loti GN=f... [more]
FUMC_HAEDU2.907e-3253.23Fumarate hydratase class II OS=Haemophilus ducreyi... [more]
FUMH_SCHPO4.958e-3257.26Fumarate hydratase, mitochondrial OS=Schizosacchar... [more]
FUMC_SYNY34.958e-3256.35Fumarate hydratase class II OS=Synechocystis sp. (... [more]
FUMC_CAMJE3.214e-3154.84Fumarate hydratase class II OS=Campylobacter jejun... [more]
FUMC_BACSU5.482e-3154.40Fumarate hydratase class II OS=Bacillus subtilis G... [more]
FUMC_BACHD7.160e-3154.40Fumarate hydratase class II OS=Bacillus halodurans... [more]
FUMC_NITEU1.221e-3056.20Fumarate hydratase class II OS=Nitrosomonas europa... [more]
FUMC2_PSEAE2.083e-3053.28Fumarate hydratase class II 2 OS=Pseudomonas aerug... [more]
FUMC_OCEIH4.641e-3053.23Fumarate hydratase class II OS=Oceanobacillus ihey... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F09-L18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675503 ID=CX675503; Name=CX675503; organism=Citrus sinensis; type=EST; length=809bp
TTAGTCCAATACGTATTATTCGAAAAATTTGTTCAATTGAATAAGATCTT
GAGTGCTCATTTTAGGGTTCCTTTTAGCCTCAAAATTATTCTCATTTATT
CTTGTATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAG
GTCTTCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATG
ACATATCACCGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTT
TTTGGTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATT
TGGATCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCG
CAGAAACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAG
GAGTTTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCA
GGTACCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAA
TGCAGCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTG
CCGCAGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATC
AATGACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCC
TCTCACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCA
GTGAATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCA
AAATGGCCATTTGATCCACCCACTGTGATGGGCACATGGTTCCCAATAAC
CTGAGCACA
back to top