CX675503

Overview
NameCX675503
Unique NameCX675503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_PSEPK (Fumarate hydratase class II OS=Pseudomonas putida (strain KT2440) GN=fumC-2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.034e-29
Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+GN   I    S GH +LNVFKP+I   LL S+ LL D   +F+++CV GI+ + E+++  L   LMLVT+LNP IGYD AA +AKKA+ EGTTL++AAL L  L +E+FD  V PE M+ P
Sbjct:  337 QVLGNDAAIGFAASQGHLQLNVFKPVIIHNLLQSIELLADGCRNFQQHCVAGIEPDAEQMAAHLERGLMLVTALNPHIGYDKAAEIAKKAYSEGTTLREAALALKYLTNEQFDQWVRPENMLAP 460          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_STAES (Fumarate hydratase class II OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fumC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.764e-29
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+GN   + +  S G+FELNVFKP+I    L S+ LL D   +F KNC  GIQ   E I+  L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +   +F+  + PE M+ P
Sbjct:  337 QVMGNDTTVGIASSQGNFELNVFKPVIMHNTLQSIYLLADGMNTFNKNCAIGIQPIEENINNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIESGYVTESQFEEWIKPEDMVDP 460          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_STAEQ (Fumarate hydratase class II OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fumC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.764e-29
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+GN   + +  S G+FELNVFKP+I    L S+ LL D   +F KNC  GIQ   E I+  L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +   +F+  + PE M+ P
Sbjct:  337 QVMGNDTTVGIASSQGNFELNVFKPVIMHNTLQSIYLLADGMNTFNKNCAIGIQPIEENINNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIESGYVTESQFEEWIKPEDMVDP 460          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_PSESM (Fumarate hydratase class II OS=Pseudomonas syringae pv. tomato GN=fumC-1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.131e-29
Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = -1
Query:  438 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 803
            QV+GN V I    S GH +LNV+KP+I   +L S+RLL D  ++F ++CV G++ + E++++ L   LMLVT+LNP IGYD +A +AKKA+ EG TL++AAL LG L  EEFD  V P+KM+
Sbjct:  337 QVMGNDVTIGFAASQGHLQLNVYKPVIIHNVLQSIRLLADGCSNFNEHCVAGMEPDAEKMAEHLERGLMLVTALNPHIGYDKSAHIAKKAYTEGLTLREAALALGYLTDEEFDAWVRPDKML 458          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_STAHJ (Fumarate hydratase class II OS=Staphylococcus haemolyticus (strain JCSC1435) GN=fumC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.701e-29
Identity = 61/124 (49.19%), Postives = 84/124 (67.74%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+GN   + +  S G+FELNVFKP+I    L S+ LL D   +F  NC  GI+   E I+  L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  337 QVMGNDTTVGIASSQGNFELNVFKPVILHNTLQSIYLLADGMQTFNDNCAVGIEPIEENINNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQSGHVTEEQFEEWIKPEDMVDP 460          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_DEIRA (Fumarate hydratase class II OS=Deinococcus radiodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.950e-28
Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = -1
Query:  450 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVP 803
            +V GN   +   GS G+F+LNVFKP++   +L S+RL+ DA  +F  +C  GIQ N  +I + L ++LM VT+LN  IGYD AAA+AKKAHKEGT+LKDAAL LG +  +EF   VVP
Sbjct:  341 RVFGNDATVAFAGSQGNFQLNVFKPVMVHAVLESIRLISDACLAFNDHCAVGIQPNEAKIKENLDKNLMQVTALNRHIGYDKAAAIAKKAHKEGTSLKDAALALGYVTEDEFAQWVVP 458          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_STAAW (Fumarate hydratase class II OS=Staphylococcus aureus (strain MW2) GN=fumC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.344e-28
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+GN   +    S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  337 QVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_STAAS (Fumarate hydratase class II OS=Staphylococcus aureus (strain MSSA476) GN=fumC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.344e-28
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+GN   +    S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  337 QVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_STAAR (Fumarate hydratase class II OS=Staphylococcus aureus (strain MRSA252) GN=fumC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.344e-28
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+GN   +    S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  337 QVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_STAAN (Fumarate hydratase class II OS=Staphylococcus aureus (strain N315) GN=fumC PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.344e-28
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+GN   +    S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  337 QVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
The following BLAST results are available for this feature:
BLAST of CX675503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_PSEPK1.034e-2951.61Fumarate hydratase class II OS=Pseudomonas putida ... [more]
FUMC_STAES1.764e-2950.00Fumarate hydratase class II OS=Staphylococcus epid... [more]
FUMC_STAEQ1.764e-2950.00Fumarate hydratase class II OS=Staphylococcus epid... [more]
FUMC_PSESM5.131e-2950.82Fumarate hydratase class II OS=Pseudomonas syringa... [more]
FUMC_STAHJ6.701e-2949.19Fumarate hydratase class II OS=Staphylococcus haem... [more]
FUMC_DEIRA1.950e-2852.54Fumarate hydratase class II OS=Deinococcus radiodu... [more]
FUMC_STAAW4.344e-2848.39Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAS4.344e-2848.39Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAR4.344e-2848.39Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAN4.344e-2848.39Fumarate hydratase class II OS=Staphylococcus aure... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F09-L18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675503 ID=CX675503; Name=CX675503; organism=Citrus sinensis; type=EST; length=809bp
TTAGTCCAATACGTATTATTCGAAAAATTTGTTCAATTGAATAAGATCTT
GAGTGCTCATTTTAGGGTTCCTTTTAGCCTCAAAATTATTCTCATTTATT
CTTGTATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAG
GTCTTCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATG
ACATATCACCGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTT
TTTGGTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATT
TGGATCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCG
CAGAAACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAG
GAGTTTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCA
GGTACCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAA
TGCAGCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTG
CCGCAGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATC
AATGACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCC
TCTCACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCA
GTGAATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCA
AAATGGCCATTTGATCCACCCACTGTGATGGGCACATGGTTCCCAATAAC
CTGAGCACA
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