CX675503

Overview
NameCX675503
Unique NameCX675503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_PROMM (Fumarate hydratase class II OS=Prochlorococcus marinus (strain MIT 9313) GN=fumC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.192e-27
Identity = 59/123 (47.97%), Postives = 85/123 (69.11%), Query Frame = -1
Query:  441 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 809
            C QVIG    +T+ G +GH ++NV+KP+I   LLHS+ LL DA   +    V+GI+ NR +I   L +SLMLVT+L P+IGYD A+ +A  AH++G +L++AALKLG ++ E+FD +V P  M
Sbjct:  339 CLQVIGLDSAVTMAGGSGHLQMNVYKPLIGFNLLHSIELLHDACRKYRLAMVQGIEPNRIKIQHDLEQSLMLVTALAPEIGYDKASEIAHLAHEKGFSLREAALKLGYVSKEDFDRIVNPALM 461          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_CHLCV (Fumarate hydratase class II OS=Chlamydophila caviae GN=fumC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.397e-26
Identity = 58/125 (46.40%), Postives = 83/125 (66.40%), Query Frame = -1
Query:  435 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 809
            CAQVIGN+  + +GGS G+FELNV KP+I    L S+ +L     +F    V G++ N+ R+ + L  SLMLVT+L P +GYD  + +A KA  +   LK+A +++G L++EEFD LVVPE M+G
Sbjct:  334 CAQVIGNNQAVIMGGSRGNFELNVMKPVIIYNFLQSVDILAGGMQAFADYFVSGLRVNKPRLKEYLDNSLMLVTALTPVLGYDKCSKMALKAFHDNINLKEACIQMGYLSAEEFDRLVVPESMVG 458          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_LISIN (Fumarate hydratase class II OS=Listeria innocua GN=fumC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.113e-26
Identity = 60/122 (49.18%), Postives = 81/122 (66.39%), Query Frame = -1
Query:  441 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 806
            AQV+GN   I +  S G+FELNV+KP+I    L S+ LL D+  SF  +C+ G+ AN   I   +++SLMLVT+LNP IGY+ AA +AK A  E TTLK+AA+K G +  +EFD  + P KM
Sbjct:  331 AQVMGNDTTINIAASQGNFELNVYKPVIIFNFLESITLLSDSMRSFRIHCLEGLTANESVIEAKVNDSLMLVTALNPHIGYEKAAKIAKLAFDENTTLKEAAIKTGFVTEKEFDLWIDPLKM 452          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_BLOFL (Fumarate hydratase class II OS=Blochmannia floridanus GN=fumC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.310e-26
Identity = 57/126 (45.24%), Postives = 87/126 (69.05%), Query Frame = -1
Query:  432 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 809
            C QV+GN + I++GGS+G  +LN ++P+I    L S+RLL D+  +F   C+ GI+   +RI KLL++SLMLVT+L+  IGYD +A +A+ A+  G TLK A+++ G +  ++FD+ V PE MI P
Sbjct:  321 CCQVMGNDLSISLGGSSGQLQLNTYRPLIIYNFLQSIRLLTDSIKNFHDYCIVGIRPKFKRIEKLLNKSLMLVTALSSHIGYDKSAQIAQTAYLNGITLKAASIQSGYVTEKQFDDWVCPENMIYP 446          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_PROMA (Fumarate hydratase class II OS=Prochlorococcus marinus GN=fumC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.889e-23
Identity = 54/125 (43.20%), Postives = 78/125 (62.40%), Query Frame = -1
Query:  435 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 809
            C Q++     +T+ GS GH ++N +KP+IA  LL S+ LL  A  S     + GI+ N E+I   L  SLML+TSL P IGY+ A+ +A+ AH++  TLK+A   LG LN ++FD +V P+ M G
Sbjct:  338 CTQIMALDSAVTMAGSGGHLQMNSYKPLIAFNLLESIDLLSSACKSSRILMIEGIEPNLEKIQNSLQNSLMLITSLTPIIGYEKASKIAQCAHEKDITLKEATKLLGYLNEDDFDRIVNPQSMTG 462          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_CHLMU (Fumarate hydratase class II OS=Chlamydia muridarum GN=fumC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.889e-23
Identity = 56/125 (44.80%), Postives = 79/125 (63.20%), Query Frame = -1
Query:  435 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 809
            C+QVIGN+  +   G+ G+FELNV KP+I    L S+ LL  A  SF    V G++ NR ++ + +  SLMLVT+L P +GYD  + +A KA  E  +LK+A + LG L+ +EFD  VVP  M+G
Sbjct:  334 CSQVIGNNQSVIFSGTKGNFELNVMKPVIIYDFLQSVNLLSGAMRSFADYFVSGLKVNRGQLQQNVERSLMLVTALAPVLGYDKCSKIALKAFHENLSLKEACVSLGFLSEQEFDTHVVPGLMLG 458          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_CHLTR (Fumarate hydratase class II OS=Chlamydia trachomatis GN=fumC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.177e-23
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = -1
Query:  435 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 809
            C+QVIGN+  I   G+ G+FELNV KP+I    L S+ LL  A  SF    V G++ N+ ++ + +  SLMLVT+L P +GYD  + +A KA  E  +LK+A + LG L+ +EFD  V+P  M+G
Sbjct:  334 CSQVIGNNQSIIFSGTKGNFELNVMKPVIIYDFLQSVNLLAGAMRSFADYFVCGLKVNKGQLQQNVERSLMLVTALAPVLGYDKCSKIALKAFHENLSLKEACVSLGFLSEKEFDEHVIPGLMVG 458          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC2_BRAJA (Fumarate hydratase class II 2 OS=Bradyrhizobium japonicum GN=fumC2 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.177e-23
Identity = 54/124 (43.55%), Postives = 76/124 (61.29%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QV+ N V +  GG+ G+ E+NV+KP+I   +  S+ +L D   +F    V G + NR++I + +  SLMLVT+L P IGYD A+ +A  A     TLK AALKLG +   EFD +V P KM+ P
Sbjct:  339 QVMANDVAVGFGGAGGYLEMNVYKPLIIHNIAQSVTILTDGCTNFRTFLVEGTEPNRKKIKEYVERSLMLVTALAPVIGYDKASRIAHYAMDNDLTLKSAALKLGFVTEPEFDRIVDPAKMVKP 462          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_PROMP (Fumarate hydratase class II OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=fumC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.143e-21
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = -1
Query:  438 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 809
            C QV+G    +++  ++G  ++N +KP+I   +L S++LL  A ++F    V GIQ N + I   L  SLMLVT+L PKIGY+ AA +A  A  E   LK+A +KLG L + EF++ +   KMI
Sbjct:  338 CTQVMGFEYAVSIANASGTLQMNEYKPLIGFNILTSIKLLNHAISNFRLKLVEGIQPNPKTIKANLENSLMLVTALVPKIGYEKAAEIANLAFNESINLKEATIKLGYLTANEFEDAINTNKMI 461          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC1_PSEAE (Fumarate hydratase class II 1 OS=Pseudomonas aeruginosa GN=fumC1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.954e-20
Identity = 51/122 (41.80%), Postives = 77/122 (63.11%), Query Frame = -1
Query:  441 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 806
            AQVIGN   I V G +G+FELNV  P++A  LLHS++LL + S       +   + N+ ++S+ L  + +LVT+LNP IGY  AA +AK+A++EG  + D AL+   L+    + L+ PEK+
Sbjct:  332 AQVIGNDAAIAVAGQSGNFELNVMLPLVADNLLHSIQLLANVSRLLADKAIASFKVNQGKLSEALARNPILVTALNPIIGYQKAAEIAKQAYREGRPIIDVALENTDLDRARLEVLLDPEKL 453          
The following BLAST results are available for this feature:
BLAST of CX675503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_PROMM8.192e-2747.97Fumarate hydratase class II OS=Prochlorococcus mar... [more]
FUMC_CHLCV1.397e-2646.40Fumarate hydratase class II OS=Chlamydophila cavia... [more]
FUMC_LISIN3.113e-2649.18Fumarate hydratase class II OS=Listeria innocua GN... [more]
FUMC_BLOFL5.310e-2645.24Fumarate hydratase class II OS=Blochmannia florida... [more]
FUMC_PROMA1.889e-2343.20Fumarate hydratase class II OS=Prochlorococcus mar... [more]
FUMC_CHLMU1.889e-2344.80Fumarate hydratase class II OS=Chlamydia muridarum... [more]
FUMC_CHLTR7.177e-2344.00Fumarate hydratase class II OS=Chlamydia trachomat... [more]
FUMC2_BRAJA7.177e-2343.55Fumarate hydratase class II 2 OS=Bradyrhizobium ja... [more]
FUMC_PROMP5.143e-2141.13Fumarate hydratase class II OS=Prochlorococcus mar... [more]
FUMC1_PSEAE1.954e-2041.80Fumarate hydratase class II 1 OS=Pseudomonas aerug... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F09-L18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675503 ID=CX675503; Name=CX675503; organism=Citrus sinensis; type=EST; length=809bp
TTAGTCCAATACGTATTATTCGAAAAATTTGTTCAATTGAATAAGATCTT
GAGTGCTCATTTTAGGGTTCCTTTTAGCCTCAAAATTATTCTCATTTATT
CTTGTATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAG
GTCTTCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATG
ACATATCACCGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTT
TTTGGTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATT
TGGATCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCG
CAGAAACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAG
GAGTTTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCA
GGTACCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAA
TGCAGCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTG
CCGCAGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATC
AATGACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCC
TCTCACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCA
GTGAATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCA
AAATGGCCATTTGATCCACCCACTGTGATGGGCACATGGTTCCCAATAAC
CTGAGCACA
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