CX675503

Overview
NameCX675503
Unique NameCX675503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: ASPA_HELPY (Aspartate ammonia-lyase OS=Helicobacter pylori GN=aspA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.954e-20
Identity = 49/126 (38.89%), Postives = 74/126 (58.73%), Query Frame = -1
Query:  432 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 809
            C  VIGN + + +    G  +LNVF+P+IA  L HS  +LG A  +    CV GI AN +     +  S+ +VT+LNP IGY+ +A +AK+A K   ++ D AL+  +L  E+ D++  PE M+ P
Sbjct:  335 CFAVIGNDLSVALAAEGGQLQLNVFEPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKSAMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENMLSP 460          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: ASPA_HELPJ (Aspartate ammonia-lyase OS=Helicobacter pylori J99 GN=aspA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.954e-20
Identity = 49/126 (38.89%), Postives = 74/126 (58.73%), Query Frame = -1
Query:  432 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 809
            C  VIGN + + +    G  +LNVF+P+IA  L HS  +LG A  +    CV GI AN +     +  S+ +VT+LNP IGY+ +A +AK+A K   ++ D AL+  +L  E+ D++  PE M+ P
Sbjct:  335 CFAVIGNDLSVALAAEGGQLQLNVFEPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKSAMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENMLSP 460          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_MYCTU (Fumarate hydratase class II OS=Mycobacterium tuberculosis GN=fumC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.427e-20
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = -1
Query:  483 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVL 806
            AQVIGN   I  GG+NG FELNV+ PM+A  +L S +LL + S  F + C+ G+ AN E + +L   S  +VT LN  IGY+ AAAVAK+A KE  T++   +  G++
Sbjct:  338 AQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLI 445          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_MYCBO (Fumarate hydratase class II OS=Mycobacterium bovis GN=fumC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.427e-20
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = -1
Query:  483 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVL 806
            AQVIGN   I  GG+NG FELNV+ PM+A  +L S +LL + S  F + C+ G+ AN E + +L   S  +VT LN  IGY+ AAAVAK+A KE  T++   +  G++
Sbjct:  338 AQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLI 445          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: ASPA_PSEFL (Aspartate ammonia-lyase OS=Pseudomonas fluorescens GN=aspA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.211e-19
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QVIGN + +T+    G  +LNV +P+IA  +  S+RLL  A     ++C+ GI AN  R  +L+  S+ LVT+LNP IGY+NA  +A+ A + G  + +   + G+L+    D+++ PE MI P
Sbjct:  348 QVIGNDLALTMAAEGGQLQLNVMEPLIAFKIFDSIRLLQRAMDMLREHCIVGITANEARCRELVEHSIGLVTALNPYIGYENATRIARIALESGRGVLELVREEGLLDDAMLDDILRPENMIAP 471          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: ASPA_BACSU (Aspartate ammonia-lyase OS=Bacillus subtilis GN=ansB PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.211e-19
Identity = 45/124 (36.29%), Postives = 77/124 (62.10%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            QVIGN   I +    G  ELNV +P++   LL S+ ++ +   SF  NC++GI+AN +R+ + + +S  ++T++NP +GY+ AA +A++A   G +++D  L+  VL  EE D ++ P +M  P
Sbjct:  342 QVIGNDNTICLASEAGQLELNVMEPVLVFNLLQSISIMNNGFRSFTDNCLKGIEANEKRMKQYVEKSAGVITAVNPHLGYEAAARIAREAIMTGQSVRDLCLQHDVLTEEELDIILNPYEMTKP 465          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_HALSA (Fumarate hydratase class II OS=Halobacterium salinarium GN=fumC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.389e-18
Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = -1
Query:  441 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 803
            QV+GN   I  G + G  +LN++KP++A   L S  +L +ASA+F +  V  ++AN       +  S+ L T+LNP IGYD A+ VAK A KEG T+ +  ++ G L+  E  +++ PE M
Sbjct:  339 QVVGNDAAIAAGAAEGQIDLNLYKPVLAHNFLQSADMLANASAAFGEKFVAKLEANEAACEAQVERSMALATALNPTIGYDKASEVAKAALKEGKTVTEVVVEKGYLSEAEAADVLDPEGM 459          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFT (Fumarate hydratase class II OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=fumC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.120e-18
Identity = 47/119 (39.50%), Postives = 74/119 (62.18%), Query Frame = -1
Query:  450 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVP 806
            +QVIG+H  +TV G +G+F+LNV  P+IA  LL S  LLG+         + G++  ++R+ ++L  + +LVT+LNP IGY+ AA +AK+A+KE   + + A +   LN  E   L+ P
Sbjct:  339 SQVIGHHTAVTVAGQSGNFQLNVTLPLIAYNLLESATLLGNVVMLLADKVIVGLKVRQDRVQEVLERNPILVTALNPIIGYEKAAVIAKRAYKEHRPVLEVACEESNLNPVELARLLDP 457          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFA (Fumarate hydratase class II OS=Xylella fastidiosa GN=fumC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.120e-18
Identity = 47/119 (39.50%), Postives = 74/119 (62.18%), Query Frame = -1
Query:  450 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVP 806
            +QVIG+H  +TV G +G+F+LNV  P+IA  LL S  LLG+         + G++  ++R+ ++L  + +LVT+LNP IGY+ AA +AK+A+KE   + + A +   LN  E   L+ P
Sbjct:  339 SQVIGHHTAVTVAGQSGNFQLNVTLPLIAYNLLESATLLGNVVMLLADKVIVGLKVRQDRVQEVLERNPILVTALNPIIGYEKAAVIAKRAYKEHRPVLEVACEESNLNPVELARLLDP 457          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: ASPA_PSEAE (Aspartate ammonia-lyase OS=Pseudomonas aeruginosa GN=aspA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18
Identity = 46/124 (37.10%), Postives = 75/124 (60.48%), Query Frame = -1
Query:  432 QVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 803
            +VIGN + +T+    G  +LNV +P+IA  +  S+RLL  A     ++C+ GI AN ER  +L+  S+ LVT+LNP IGY+N+  +AK A + G  + +   +  +L+     ++++PE MI P
Sbjct:  344 EVIGNDLALTLAAEGGQLQLNVMEPLIAYKIFDSIRLLQRAMDMLREHCITGITANVERCHELVEHSIGLVTALNPYIGYENSTRIAKTALESGRGVLELVREEKLLDEATLADILLPENMIAP 467          
The following BLAST results are available for this feature:
BLAST of CX675503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ASPA_HELPY1.954e-2038.89Aspartate ammonia-lyase OS=Helicobacter pylori GN=... [more]
ASPA_HELPJ1.954e-2038.89Aspartate ammonia-lyase OS=Helicobacter pylori J99... [more]
FUMC_MYCTU7.427e-2046.30Fumarate hydratase class II OS=Mycobacterium tuber... [more]
FUMC_MYCBO7.427e-2046.30Fumarate hydratase class II OS=Mycobacterium bovis... [more]
ASPA_PSEFL8.211e-1938.71Aspartate ammonia-lyase OS=Pseudomonas fluorescens... [more]
ASPA_BACSU8.211e-1936.29Aspartate ammonia-lyase OS=Bacillus subtilis GN=an... [more]
FUMC_HALSA2.389e-1838.84Fumarate hydratase class II OS=Halobacterium salin... [more]
FUMC_XYLFT3.120e-1839.50Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
FUMC_XYLFA3.120e-1839.50Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
ASPA_PSEAE5.322e-1837.10Aspartate ammonia-lyase OS=Pseudomonas aeruginosa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F09-L18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675503 ID=CX675503; Name=CX675503; organism=Citrus sinensis; type=EST; length=809bp
TTAGTCCAATACGTATTATTCGAAAAATTTGTTCAATTGAATAAGATCTT
GAGTGCTCATTTTAGGGTTCCTTTTAGCCTCAAAATTATTCTCATTTATT
CTTGTATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAG
GTCTTCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATG
ACATATCACCGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTT
TTTGGTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATT
TGGATCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCG
CAGAAACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAG
GAGTTTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCA
GGTACCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAA
TGCAGCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTG
CCGCAGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATC
AATGACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCC
TCTCACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCA
GTGAATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCA
AAATGGCCATTTGATCCACCCACTGTGATGGGCACATGGTTCCCAATAAC
CTGAGCACA
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