CN187734

Overview
NameCN187734
Unique NameCN187734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187734 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.324e-21
Identity = 75/256 (29.30%), Postives = 115/256 (44.92%), Query Frame = 3
Query:   27 YKAAAILKGFEEQKMAQIGSSLLVPCVQELVKNPALVVPDRYIRP----DQDSPLISDDTLISQIPVIDMQXXXXXXXXXXXXA--KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEG-FGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILL 773
            +  A+ LK F+E K            V+ LV +    VP  +  P        PL SD   +  IP ID+             A  ++  A  +WGFFQ++NHG+S   LEK+KK V  F   S E +K+++         +   F +      +W D FS    P    KP     LP   R+ +  YS ++ +L + L   + E L ++   + +   +    M  +YYPPCP+P+  +G S HSD + LT+LL
Sbjct:   10 FDRASELKAFDETKTG----------VKGLVDSGVSQVPRIFHHPTVKLSTPKPLPSDLLHLKTIPTIDLGGRDFQDAIKRNNAIEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFYSRDFSRRFLYLSNFDLFSSPAANWRDTFSCTMAP-DTPKPQ---DLPEICRDIMMEYSKQVMNLGKFLFELLSEALGLEPNHLNDMDCSKGLLMLSHYYPPCPEPDLTLGTSQHSDNSFLTVLL 251          
BLAST of CN187734 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.403e-20
Identity = 63/223 (28.25%), Postives = 105/223 (47.09%), Query Frame = 3
Query:  138 VPDRYIRPDQDSPLISDDTLISQIPVIDMQXXXXXXXXXXXXAK--LDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLP---VHLR--KPHLFPKLPPSLRETLEVY---SMELKSLAENLISKMGEVLNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 776
            +P +++ PD + P  S D    Q+P+ID+             A   +  A  + GFF + NHG+  + L +    ++ FF     EK+K  +  G+  G+  +FV     KL W +  S    P   +H +  K  +  K+     +  +VY   +  + +L+  ++  +G  L ++    +EFFE+     R+NYYP C QPE  +G  PH D  +LTIL Q
Sbjct:   37 IPQQFVWPDHEKP--STDVQPLQVPLIDLAGFLSGDSCLASEATRLVSKAATKHGFFLITNHGVDESLLSRAYLHMDSFFKAPACEKQKAQRKWGESSGYASSFVGRFSSKLPWKETLSFKFSPEEKIHSQTVKDFVSKKMGDGYEDFGKVYQEYAEAMNTLSLKIMELLGMSLGVERRYFKEFFEDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQ 257          
BLAST of CN187734 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.403e-20
Identity = 65/220 (29.55%), Postives = 97/220 (44.09%), Query Frame = 3
Query:  138 VPDRYIRPDQDSPLISDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSM-----LTLPV--HLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 776
            +P+ ++ P+ D+   S   L   +  + +             A++  AC   GFFQ+  HG+  A           FF L + EK++  + PG + G+  A       KL W +  S         PV        L P   P  R   + Y  E+K L+  ++  +   L ++    REFF +    MR NYYPPCP+PE+ +G  PH D  ALTILLQ
Sbjct:   42 IPEPFVWPNGDARPASAAELDMPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGTVSGYTSAHADRFASKLPWKETLSFGFHDRAAAPVVADYFSSTLGPDFAPMGR-VYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQ 260          
BLAST of CN187734 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.403e-20
Identity = 65/220 (29.55%), Postives = 97/220 (44.09%), Query Frame = 3
Query:  138 VPDRYIRPDQDSPLISDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSM-----LTLPV--HLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 776
            +P+ ++ P+ D+   S   L   +  + +             A++  AC   GFFQ+  HG+  A           FF L + EK++  + PG + G+  A       KL W +  S         PV        L P   P  R   + Y  E+K L+  ++  +   L ++    REFF +    MR NYYPPCP+PE+ +G  PH D  ALTILLQ
Sbjct:   42 IPEPFVWPNGDARPASAAELDMPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGTVSGYTSAHADRFASKLPWKETLSFGFHDRAAAPVVADYFSSTLGPDFAPMGR-VYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQ 260          
BLAST of CN187734 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.139e-20
Identity = 57/173 (32.95%), Postives = 93/173 (53.76%), Query Frame = 3
Query:  267 KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFFENGVQ---AMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 776
            K++ AC+ WGFF+LVNHGMST  L+ ++K  +  +  +ME++ K       +   G   V SE   LDW   F +  LP         P L    R+T++ +++EL+ LAE L+  + E L ++   +++ F          +++ YPPCP+P+ + GL  HSDA  + +L Q
Sbjct:   23 KINDACENWGFFELVNHGMSTELLDTVEKMTKDHYKKTMEQRFKEM-----VAAKGLDDVQSEIHDLDWESTFFLRHLP--SSNISEIPDLEEEYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHSDAGGIILLFQ 188          
BLAST of CN187734 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.558e-19
Identity = 63/221 (28.51%), Postives = 110/221 (49.77%), Query Frame = 3
Query:  138 VPDRYIRPDQDSPLISDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVH-LRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFFEN----GVQA-MRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLN 782
            +PD Y    +D  L S       +P+ID+               +  AC  WG FQ+ NHG+ +  L+ ++      F L ++ K K  +    + G+G A + S   K  W++ F+++  P+H  RK  L+P       E +E Y   ++ LA  L+      L +++++++    N    G QA +++N+YP CP+P++ MGL+ H+D+  +TIL Q N
Sbjct:   27 LPDSYTWTPKDDLLFSASASDETLPLIDLSDIHVATL-------VGHACTTWGAFQITNHGVPSRLLDDIEFLTGSLFRLPVQRKLKAARSENGVSGYGVARIASFFNKKMWSEGFTVIGSPLHDFRK--LWPSHHLKYCEIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNN 238          
BLAST of CN187734 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.035e-19
Identity = 59/196 (30.10%), Postives = 100/196 (51.02%), Query Frame = 3
Query:  198 ISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFFENGVQ---AMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 776
            ++  PV+DM              K++ AC+ WGFF+LVNHG+ST  L+ ++K  +  +  +ME++ K       +E      V SE   LDW   F +  LP         P L    R+T++ +++EL+ LAE L+  + E L ++   +++ F          +++ YPPCP+P+ + GL  H+DA  + +L Q
Sbjct:    1 MATFPVVDMDLINGEERAATLE-KINDACENWGFFELVNHGISTELLDTVEKMNKDHYKKTMEQRFKEMVAAKGLEA-----VQSEIHYLDWESTFFLRHLP--SSNISEIPDLEEDYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQ 188          
BLAST of CN187734 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.010e-18
Identity = 71/249 (28.51%), Postives = 117/249 (46.99%), Query Frame = 3
Query:   87 SLLVPCVQELVKNPALV-----VPDRYIRPDQDSP-LISDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRK------PHLFPKLPPS----LRETLEVYSMELKSLAENLISKMGEVLNIKDEE---MREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 776
            S++V   QE+V + A++     +P ++I P ++SP  ++ + L  ++ +ID+              +   AC+  GFF +VNHG+  A LE+  + ++ FF L + EK++  +  G+  G+  +F      KL W +  S         +       +L  KL       L E    Y  E+  L+  L+  +GE L I  +     R FF+     MR+NYYP C +P   +G  PH D  +LTIL Q
Sbjct:    2 SMVVQQEQEVVFDAAVLSGQTEIPSQFIWPAEESPGSVAVEEL--EVALIDVGAGAERSSVVRQVGE---ACERHGFFLVVNHGIEAALLEEAHRCMDAFFTLPLGEKQRAQRRAGESCGYASSFTGRFASKLPWKETLSFRYSSAGDEEGEEGVGEYLVRKLGAEHGRRLGEVYSRYCHEMSRLSLELMEVLGESLGIVGDRRHYFRRFFQRNDSIMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQ 245          
BLAST of CN187734 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18
Identity = 70/262 (26.72%), Postives = 111/262 (42.37%), Query Frame = 3
Query:    3 DSVLFQNQYKAAAILKGFEEQKMAQIGSSLLVPCVQELVKNPALVVPDRYIRPDQDSPLISDDTLISQIPVIDMQXXXXXXXXXXXXA-KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQA---FVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 776
            +S   +  Y   + LK F++ K            V+ LV +    VP  ++ P +D     +   +   PVID+Q              K+  A ++WGFFQ+VNHG+ T+ L++  +    FF    E KK+Y+      +    +      S      W D       P     P    + P    E+L  +S ++K L   L+  + E L +    ++++ +        NYYPPCPQPE  MG   H+D   +TILLQ
Sbjct:    2 ESPRVEESYDKMSELKAFDDTKAG----------VKGLVDSGITKVPQIFVLPPKDRAKKCETHFV--FPVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYMAP----NPPSLQEFPTPCGESLIDFSKDVKKLGFTLLELLSEGLGLDRSYLKDYMDCFHLFCSCNYYPPCPQPELTMGTIQHTDIGFVTILLQ 247          
BLAST of CN187734 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 58/194 (29.90%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  210 PVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFF---ENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLN 782
            PVIDM+             K+  AC+ WGFF+LVNHG+S   ++ +++  +  +N  ME++ K       +E      V SE   LDW   F +  LPV        P L    R+ ++ ++ +L+ LAE L+  + E + ++   +++ F   +      +++ YPPCP+PE + GL  H+DA  + +L Q N
Sbjct:    5 PVIDMEKLNGEERAPTME-KIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQRFKEMVATKGLEA-----VQSEINDLDWESTFFLRHLPV--SNISEIPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILLFQDN 190          
The following BLAST results are available for this feature:
BLAST of CN187734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
ACCH3_ARATH6.324e-2129.301-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GAOX3_ARATH2.403e-2028.25Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
GAOX2_ORYSJ2.403e-2029.55Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI2.403e-2029.55Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
ACCO1_MALDO3.139e-2032.951-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
G3OX2_ARATH1.558e-1928.51Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
ACCO2_MALDO2.035e-1930.101-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
GAOX1_ORYSJ1.010e-1828.51Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
ACCH3_SOLLC2.249e-1826.721-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO_ACTDE2.938e-1829.901-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187734 ID=CN187734; Name=CN187734; organism=Citrus sinensis; type=EST; length=783bp
ATGACTCAGTCTTGTTCCAAAATCAATACAAAGCTGCAGCAATCTTGAAA
GGATTTGAGGAACAAAAGATGGCCCAGATTGGAAGTTCTCTCCTTGTGCC
TTGTGTTCAAGAGTTGGTCAAGAATCCTGCGTTAGTTGTCCCCGACAGAT
ACATACGTCCAGATCAAGATTCACCACTCATTTCTGATGATACTTTGATT
TCACAGATACCAGTTATTGACATGCAAAGCTTACTTTCTGAAGAATCAAT
GGATTCTGAGCTAGCCAAGCTCGACTTCGCATGCAAAGAATGGGGTTTTT
TCCAGCTGGTAAATCATGGAATGAGCACAGCATTTCTAGAGAAATTAAAG
AAAGAGGTTGAGGGATTCTTCAATCTCAGCATGGAAGAAAAGAAAAAATA
TTGGCAGCATCCAGGAGATATGGAAGGCTTTGGACAAGCCTTTGTTGTAT
CTGAGGAACAAAAGCTTGATTGGGCTGACCTTTTCTCCATGCTGACTCTT
CCAGTTCATCTGAGGAAGCCACACTTATTTCCTAAGCTCCCTCCTTCCCT
CAGAGAGACCTTGGAAGTTTACTCAATGGAATTAAAATCCCTAGCCGAGA
ACCTAATATCGAAAATGGGAGAAGTGTTAAATATCAAAGATGAAGAAATG
AGAGAATTCTTTGAAAATGGAGTGCAAGCAATGAGGATGAATTATTACCC
TCCATGTCCTCAGCCCGAGAAGGTTATGGGCCTGTCGCCACATTCTGATG
CAGCTGCACTTACCATTCTGCTACAACTTAATG
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