CN187733

Overview
NameCN187733
Unique NameCN187733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1_CRYHO (Eukaryotic peptide chain release factor subunit 1 OS=Cryptosporidium hominis GN=erf1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query:  579 LPTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            +   Q NV+ LILAGSADFK EL+QSD+FD RL +KIL +VDVSYGG+NG
Sbjct:  210 ITNDQVNVAALILAGSADFKNELAQSDIFDQRLASKILKIVDVSYGGDNG 259          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1_TETTH (Eukaryotic peptide chain release factor subunit 1 OS=Tetrahymena thermophila GN=ERF1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 3
Query:  597 NVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            NV GL+LAGS DFK ELS + MFDPRL  KI+ +VDVSYGGENG
Sbjct:  219 NVQGLVLAGSGDFKNELSTTQMFDPRLACKIIKIVDVSYGGENG 262          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1_PODAN (Eukaryotic peptide chain release factor subunit 1 OS=Podospora anserina GN=SU2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 3
Query:  597 NVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            NV G++LAGSADFK +L+ SDMFD RL  K++ VVDVSYGGENG
Sbjct:  221 NVMGIVLAGSADFKNDLNASDMFDQRLATKVIKVVDVSYGGENG 264          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1_BLEAM (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma americanum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query:  579 LPTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            + + + NV+GLI+AGSA+FK  L QSD+FD RL AK+L +VDV+YGGENG
Sbjct:  214 ISSDKVNVAGLIIAGSAEFKNVLVQSDLFDQRLAAKVLKIVDVAYGGENG 263          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1_DIDNA (Eukaryotic peptide chain release factor subunit 1 OS=Didinium nasutum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:  579 LPTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            +    PNV GLILAGSA+FK +L +SD+FD RLQ  ++ +VD+SYGGENG
Sbjct:  216 ITNDMPNVKGLILAGSAEFKNDLQKSDLFDLRLQPIVIKLVDISYGGENG 265          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1_BLEMU (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma musculus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 3
Query:  597 NVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            NV+GLI+AGSA+FK  L QSD+FD RL AK+L +VDV+YGGENG
Sbjct:  220 NVAGLIIAGSAEFKNVLVQSDLFDQRLAAKVLKIVDVAYGGENG 263          
The following BLAST results are available for this feature:
BLAST of CN187733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ERF1_CRYHO3.643e-1268.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TETTH1.060e-1172.73Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PODAN3.084e-1170.45Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEAM5.260e-1162.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DIDNA6.869e-1160.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEMU6.869e-1170.45Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187733 ID=CN187733; Name=CN187733; organism=Citrus sinensis; type=EST; length=728bp
AGGAGAGCCGGCCCCTTTTTTTTTTTTTTTTCAAGAACAAACATATCAAC
TTAATTATTTGTAGCCTATTTTACAATTAAACTTGGAGTAAAACATAATT
GTAATTAAAATAATAATAATAATAATAATAATAGTAGTAGTAGACTAGTA
GTAGTAAAATTGAAGTGTTAGCTTGGCAATACTATTCTTGAATTTGCCAT
AGCTGTCGTGGTGACGGTGGTGGTTGAAGAACTACGGGCATCTAACCCAG
CAGCCCATCTTCTAAGAATCCTCAACAGTGCTGCCGCCTTTCTTCTTGCC
CTCGCAGTTCCACTTTCCATTAATTCCCATATTACCCTCTCAATCCCCGG
CACCGCTGCAATATCCGCCACCATCTCCGACCCGCCTTTTCTACATATAG
TCACGAGAGTCGCCGCTGCACTTTCTCTCGACGTGTCGGACCCTTCCCTT
AACAAAATGCACAGTTTCTTTATTGTATTATACGCCGCCACAATCGCCGT
CAGCCCGCCTCTCTTCACCACGGCTTCGAGTATGGTTACCGATTCTTCCG
GTAACACGTCCATCGCCTCAGCTACAATCTCCCTACCAGTCAGCCCAATG
TGTCTGGATTAATTCTTGCTGGTTCTGCTGATTTCAAAACTGAGCTGAGC
CAGTCTGATATGTTTGATCCTCGTTTACAAGCCAAGATATTGAATGTTGT
TGATGTTTCTTATGGTGGGGAAAATGGT
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